Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst10g00245 | ATGGAGAAGAAGAAGCTAAACCTCATCATCCCTAATCCTCAACCTCATGGAATCATTCCACGCGGCAATAATTCCTCTTTCTCCCAAGGACAAGATTCACTGTGGATGATGAATTTGAGGACTGACGAAACAATGGATTCTGGAGCTTATCCCGAGCGACCAGGGGAGCCAGATTGTTCATACTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTCAATCATCCTCTTAACAGGAAGCTGGCTATTGCCACTGCCAGGATGATAGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCGCTCCGCCCCAATGAGCCAGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCGAGTAATACGATGCTTTCATTACAGGATTCTCCTGTTTACCCTACCGTTCATTCTCCAACTACACCAGGTCAGCAGTCATATGCTGGAGGAATTACAAATTGGTCAAGGGCATCATACATTCCTAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTTCCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGATAGTCTGCAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAAGTGAGCTAGCAAACACAGGATCACATGGAGCATATTCTCAACTCCGTTCGGGTACTGTTCCAGTTGGGTTTTATGCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGCCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCACGGGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTCTACGTCCTGGAGAACCTTTGTGTGTATTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCATCCAATGGGAATTTTCACCTGTAATATCTCTGCATCGCCTTCAGCCGATGCCCCAAGCATGCATCTGTTAGGATCTTCATCAGGAACTGCTGCATTAAATTTATCTTCTGATGGGCTTGTTGAGTCAAACTCAGCAACGCCCAGGCGGCTTTCATTATCAGAGACAAGACAGATTCCTTCTGATGATGATGACATTGACGATGATGGATGA | 1338 | 0.4552 | MEKKKLNLIIPNPQPHGIIPRGNNSSFSQGQDSLWMMNLRTDETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPLNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNTMLSLQDSPVYPTVHSPTTPGQQSYAGGITNWSRASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSLQQAMRNGQTYGTSRQSELANTGSHGAYSQLRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTCNISASPSADAPSMHLLGSSSGTAALNLSSDGLVESNSATPRRLSLSETRQIPSDDDDIDDDG | 445 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst10g00245 | 445 | ProSiteProfiles | Zinc finger C3H1-type profile. | 98 | 126 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | ProSiteProfiles | Zinc finger C3H1-type profile. | 351 | 379 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | PANTHER | PROTEIN PHOSPHATASE RELATED | 42 | 397 | - | - | |
Spst10g00245 | 445 | Gene3D | - | 303 | 391 | - | - | |
Spst10g00245 | 445 | Gene3D | - | 52 | 129 | - | - | |
Spst10g00245 | 445 | FunFam | Zinc finger nuclease 2 | 52 | 129 | - | - | |
Spst10g00245 | 445 | ProSiteProfiles | Zinc finger C3H1-type profile. | 305 | 333 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | SUPERFAMILY | CCCH zinc finger | 147 | 172 | IPR036855 | GO:0046872 | |
Spst10g00245 | 445 | MobiDBLite | consensus disorder prediction | 415 | 430 | - | - | |
Spst10g00245 | 445 | Gene3D | - | 130 | 181 | - | - | |
Spst10g00245 | 445 | ProSiteProfiles | Zinc finger C3H1-type profile. | 53 | 81 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 101 | 125 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 147 | 171 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 307 | 332 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 353 | 378 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 55 | 79 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | MobiDBLite | consensus disorder prediction | 415 | 445 | - | - | |
Spst10g00245 | 445 | SUPERFAMILY | CCCH zinc finger | 309 | 335 | IPR036855 | GO:0046872 | |
Spst10g00245 | 445 | SUPERFAMILY | CCCH zinc finger | 354 | 378 | IPR036855 | GO:0046872 | |
Spst10g00245 | 445 | SUPERFAMILY | CCCH zinc finger | 102 | 127 | IPR036855 | GO:0046872 | |
Spst10g00245 | 445 | SMART | c3hfinal6 | 53 | 80 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | SMART | c3hfinal6 | 144 | 171 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | SMART | c3hfinal6 | 351 | 378 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | SMART | c3hfinal6 | 98 | 125 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | SMART | c3hfinal6 | 305 | 332 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | ProSiteProfiles | Zinc finger C3H1-type profile. | 144 | 172 | IPR000571 | GO:0046872 | |
Spst10g00245 | 445 | SUPERFAMILY | CCCH zinc finger | 58 | 81 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst10g00245 | Spst-Chr10 | 2355553 | 2359529 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst10g00245 | 34 | 443 | C2H2 Transcription Factor Family | AT3G02830 | 60.766 | 1.87e-177 | 499 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Spst10g00245 | zf-CCCH | 5.4e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst10g00245 | - | - | ccaj:109816515 | 799.66 |