Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00245 ATGGAGAAGAAGAAGCTAAACCTCATCATCCCTAATCCTCAACCTCATGGAATCATTCCACGCGGCAATAATTCCTCTTTCTCCCAAGGACAAGATTCACTGTGGATGATGAATTTGAGGACTGACGAAACAATGGATTCTGGAGCTTATCCCGAGCGACCAGGGGAGCCAGATTGTTCATACTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTCAATCATCCTCTTAACAGGAAGCTGGCTATTGCCACTGCCAGGATGATAGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCGCTCCGCCCCAATGAGCCAGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCGAGTAATACGATGCTTTCATTACAGGATTCTCCTGTTTACCCTACCGTTCATTCTCCAACTACACCAGGTCAGCAGTCATATGCTGGAGGAATTACAAATTGGTCAAGGGCATCATACATTCCTAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTTCCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGATAGTCTGCAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAAGTGAGCTAGCAAACACAGGATCACATGGAGCATATTCTCAACTCCGTTCGGGTACTGTTCCAGTTGGGTTTTATGCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGCCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCACGGGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTCTACGTCCTGGAGAACCTTTGTGTGTATTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCATCCAATGGGAATTTTCACCTGTAATATCTCTGCATCGCCTTCAGCCGATGCCCCAAGCATGCATCTGTTAGGATCTTCATCAGGAACTGCTGCATTAAATTTATCTTCTGATGGGCTTGTTGAGTCAAACTCAGCAACGCCCAGGCGGCTTTCATTATCAGAGACAAGACAGATTCCTTCTGATGATGATGACATTGACGATGATGGATGA 1338 0.4552 MEKKKLNLIIPNPQPHGIIPRGNNSSFSQGQDSLWMMNLRTDETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPLNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNTMLSLQDSPVYPTVHSPTTPGQQSYAGGITNWSRASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSLQQAMRNGQTYGTSRQSELANTGSHGAYSQLRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTCNISASPSADAPSMHLLGSSSGTAALNLSSDGLVESNSATPRRLSLSETRQIPSDDDDIDDDG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00245 445 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Spst10g00245 445 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Spst10g00245 445 PANTHER PROTEIN PHOSPHATASE RELATED 42 397 - -
Spst10g00245 445 Gene3D - 303 391 - -
Spst10g00245 445 Gene3D - 52 129 - -
Spst10g00245 445 FunFam Zinc finger nuclease 2 52 129 - -
Spst10g00245 445 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Spst10g00245 445 SUPERFAMILY CCCH zinc finger 147 172 IPR036855 GO:0046872
Spst10g00245 445 MobiDBLite consensus disorder prediction 415 430 - -
Spst10g00245 445 Gene3D - 130 181 - -
Spst10g00245 445 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Spst10g00245 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872
Spst10g00245 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 171 IPR000571 GO:0046872
Spst10g00245 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 332 IPR000571 GO:0046872
Spst10g00245 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 378 IPR000571 GO:0046872
Spst10g00245 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Spst10g00245 445 MobiDBLite consensus disorder prediction 415 445 - -
Spst10g00245 445 SUPERFAMILY CCCH zinc finger 309 335 IPR036855 GO:0046872
Spst10g00245 445 SUPERFAMILY CCCH zinc finger 354 378 IPR036855 GO:0046872
Spst10g00245 445 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872
Spst10g00245 445 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Spst10g00245 445 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Spst10g00245 445 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Spst10g00245 445 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Spst10g00245 445 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Spst10g00245 445 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Spst10g00245 445 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00245 Spst-Chr10 2355553 2359529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00245 34 443 C2H2 Transcription Factor Family AT3G02830 60.766 1.87e-177 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst10g00245 zf-CCCH 5.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00245 - - ccaj:109816515 799.66