Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00225 ATGCATGGCCCGTGGACACGTGGACTGCACACGTGCAGAATTCGGTCATCTCCGTTGCAAAATCTCATCATAGCAATTGAAGACAAGGGAAGGAAATCTTGTTCATCAATGGCAACCACCGCAGAGAATGAAGTATCTGCACTGAAACAAAAGTTGCAGGATTTGGTTAAGAGTATCGTGGACAATGATGATTACCCCGTTCAAGCCGCCAACGAGGCTATCCATGCTCTTTCTACTCTCAAGGATTTGAAATGCACCACTCCTCTCTCAACCAACTTGGATGATTCAGGCGTACCTTCGCACTATCGATGCCCTCTCTCCAATCACTTGATGTCAGATCCTGTTATATTGACCTCTGGACAGACTTTTGATCGTCCATTCATCCAGAATTGGCTGAATCGGGTCCACGGAATGTGCCCTCAGACCCACCAAGTCCTCTCTCACGTTATTCTTACTCCTAATTTCTTGCTCCAAAGCATGATCTCAAACTGGTGCAAACTGAGCGGAGTTGACATTCCGAAGCCTGTTTTTGACATTCACGACGAACAGGTAACCGAGGCACACAGACACCGTTTGCGTTCATTGCTCTTCAAGCTGTCACTGTCAGTTTCTGAACAGAAAGAAGCTGCAAAAGAGCTTCGCCAGTTAGCAAAACAAATGTCCGGAATTCGATCACTCTTTGGGAACTTGCAAATGATTCAGCTATTGATCCGTCCGTTATCATCCGGCACAGCTTCTGTGGACACCGATCTCCAAGAGGATTTGATTTCTACTCTTCTAAATCTCACAATTAACGATGTCAACAAGAGGGTGTTCATAGAAAACGAAAGCGTCATCACCGTTCTCATTGATTCATTGAAATGCGGAACAGTTGAAACAAGAAGCAATGCAGCTGCTGCTTTTTCCTCATTATCATCTCTTGATTCAAACAAGCACATAATTGGAAAATCTGGAGCTATAAAACCCTTGGTGAATTTACTAGAGGAGGGAGACCCATTAGCCATGAAAGATGCTGGTTCAGCCTTGTTCAAACTATGTTTTGCCCGTGAAAATATAGCGAGGACCGTACGAGAAGGGGTAGTGCAGGTTATTCTTGGCAAGATCGTTGACCATGTTCTTGTTGATGAGTTGTTGTCACTGTTGGCACTTTTGGCTACACACGCTAAAGCCGTTGAAGAGTTGGTGAGTCACGGTGGTGTCCGTTTCTTGCTTGATATCTTGAGGGATAACACAGAGGAACGCATCCAGGAGAACATTGCTGTTATTCTACATCTAGTCTGTTGCCATGACAAAGAAAAAAGAGAGGAGATTAAAGAGGAAGAAATGGTCCATAGCACACTCTCTAAGCTTGAACATAACGGGTCCTCAAGGGCTAAAAGAAAAGCTAGCTCCATCCTTCAGTGTCTTGGCATAGATTATTCCACTTCGCGATACACTCAAATTTCAGAGTTGGTCCGTGTGAAAGGCACGGTAGGACTTAACCGTACAAAGGAATTGCAATATTATACACTCAAGACGCACTATGTCGAGAGTGATGGTAATGAGCTTGTGGAGGAGTGTAGTTTGGTTAACGTCACCATCAATGAGGAAGAGAACAAGATAGAGTAG 1608 0.444 MHGPWTRGLHTCRIRSSPLQNLIIAIEDKGRKSCSSMATTAENEVSALKQKLQDLVKSIVDNDDYPVQAANEAIHALSTLKDLKCTTPLSTNLDDSGVPSHYRCPLSNHLMSDPVILTSGQTFDRPFIQNWLNRVHGMCPQTHQVLSHVILTPNFLLQSMISNWCKLSGVDIPKPVFDIHDEQVTEAHRHRLRSLLFKLSLSVSEQKEAAKELRQLAKQMSGIRSLFGNLQMIQLLIRPLSSGTASVDTDLQEDLISTLLNLTINDVNKRVFIENESVITVLIDSLKCGTVETRSNAAAAFSSLSSLDSNKHIIGKSGAIKPLVNLLEEGDPLAMKDAGSALFKLCFARENIARTVREGVVQVILGKIVDHVLVDELLSLLALLATHAKAVEELVSHGGVRFLLDILRDNTEERIQENIAVILHLVCCHDKEKREEIKEEEMVHSTLSKLEHNGSSRAKRKASSILQCLGIDYSTSRYTQISELVRVKGTVGLNRTKELQYYTLKTHYVESDGNELVEECSLVNVTINEEENKIE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00225 535 Gene3D - 372 488 IPR011989 -
Spst10g00225 535 PANTHER U BOX DOMAIN-CONTAINING 37 469 - -
Spst10g00225 535 ProSiteProfiles U-box domain profile. 97 171 IPR003613 GO:0004842|GO:0016567
Spst10g00225 535 CDD RING-Ubox_PUB 99 151 IPR045210 -
Spst10g00225 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 171 IPR013083 -
Spst10g00225 535 SUPERFAMILY RING/U-box 93 170 - -
Spst10g00225 535 SUPERFAMILY ARM repeat 202 472 IPR016024 -
Spst10g00225 535 Coils Coil 38 58 - -
Spst10g00225 535 SMART arm_5 307 347 IPR000225 GO:0005515
Spst10g00225 535 SMART arm_5 387 428 IPR000225 GO:0005515
Spst10g00225 535 SMART arm_5 265 306 IPR000225 GO:0005515
Spst10g00225 535 SMART arm_5 219 264 IPR000225 GO:0005515
Spst10g00225 535 Gene3D - 198 371 IPR011989 -
Spst10g00225 535 SMART Ubox_2 101 164 IPR003613 GO:0004842|GO:0016567
Spst10g00225 535 Pfam U-box domain 98 166 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00225 Spst-Chr10 2219745 2224278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00225 160 469 U-box Gene Family AT3G07360 51.266 3.45e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00225 - - gmx:100806132 511.531