Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00224 ATGAATCCATCGTATCCTAGCTCTGATCTTTCTTCAACTCTTTCATCCCTCAAAAACCTAATTGCTCTCTCAAATCATGTTCTCTCTGTCACACCATCACCACCAACCCTAAACGCGAACCTAATACAATGCCCTTTCAATCCACACCACCTTATTCACCCTCATTCCCTCTTCCTTCACCACCTTCGTTGCCCTTCCTCTCCGCGCCCTCTTCCCGATCTCACTCACTCTCTCACTTACCCCCAAACCCTCCACAACTCTCCCTCTGATCAACTCTCTTTCTATCTCCACTCCCTCTCCAACTTCTTCTACCGTGATTGCCCGGCCGTCGTTTCTTTTTCCCATGCGGACTCCCTCACCAGAACAGCCACCCTCACGCTTCCCGCCTTTTTATCTATCGAATGCGCCGACACAGATACCCACTCCAACCTCGAGCGACTGTCTCACCACGCGCCCATTCTCCCCTCTCAGTACTTCTCTATCGCTCGTGAACTCCAGTCCTGGCATGATTTTCCAACCACCTTCTCCAACTTCGTTCGTCGTGCCATTTTAGGTCTCGGAATTGCCAACGACCGTGACTTGATGGATTGGATAATAGCGAATTCGCCTCGTTACGGCGTTGTTGTTGACACCTCTATGCAACAGCATATGTTTCTGTTATGCTGCCCGTGTCTCATGTCGATTATAAGAGAAGCTTCCGTTTCCATGGAAAACAAAAATTCGCATGTAAGTTGCCCCGTTTCGAACCAGGCTTTGACGTGGCTAGCGTATCAGGTTTCGATCCTTTACGGGGCTGCAAACGGAAAGGCTTTTGTTCTTAATTTCGTGAAGAAATGTATCACGGTTGGTGCGTCTGTTTTGCTGTTGTTTCCTTTAGGGAACGAAGCTGCTTCAATGCATGAGTCTCATAATTTAGATACAGGGAGTGGGAACATTAAGGTGGCAAAATCTGCCGCTCCAGGTGGAGAAAAGAAAAATTGCATACTGGATAGAAAGATTTCTGTGTGCCAAGTTGCAGCGGCTGTTGCGGCATTGCATGAACGATCTTTGCTTGAACAGAAAATTAAGGGATTTTGGCAGCAGCCAAGTAACTATCAGCTGGTTGCTGAACATTCTTATTTGTCCGAGAAAGCAAATGAAGAGCGGACAAAACGTCCAGATTATAGACCTATAATTGATCATGATGGTATTCATAGGCCTCAATTATCTAACCAGGAATCATCTAGAGAAAAGACACGAGAGGAGTTGCTAGCTGAAGAAAGGGATTACAAACGTCGAAGAATGTCTTATCGTGGCAAGAAGACAAATCAATCACCTTTACAGGTGATGAGGTACATGATAGAGGATTTCATGGAGCAAATCAAGCAGGCTGAGGGTTTTGAGAGCCCTTTGAAGATGTCTGAAGAGAGTGGATTGTTTCCATTTAAGCCTCCTGGCCATGACATTTCTATGGAAGCTAATAATTCAAGAAAAGCTAGTCATGACTCACCTGCAGTGACAACCAGCAAACCACATTATTGTGAGCAACAATCACACTCTAACTGTTGTGATGAAAGCAAAAATTTGGATGGTGCATTTTCTAGAGATTACAAACAACTCAAACATGAGCGTCAACGGAGCCATTATTACCGAGAAGATCAGTGGAATGCTGATCGGGGAAAATATCATAGAAACCGGTCTTCTACAAGCCCTGTAAGACACTCAAGTCATAGTCAATCACGGGAGCATAGTAGCCATCATATCAAACAGGATTACTACTCAAATAGAAAGAAGCATGATAACTCATCTAGATTCAGGGATAGGTTGCAGAATGACACTCACGGGAGTCATATTTCAGATTCTTTCCCAAATAAGACATTTTCAGATCGATATGACCCTTCTGAATCTCTTGATATATGTGATGATGACATATCCTCTGATGCCAAATATATCAAGTCCGACAAAGATTGGCTTGGTCAGAACCGTGATGACACTACATCTGTAGTGGCCTCAATTGAAGACAAGGAAAGGAAATCTTGTTCTGCAATGGCAACCACCGCCGAGAATGAAGTATCTGCACTGAAACAGAAGTTGCAGGATTTGGTTAAGAGTATCGTGGACAATGATGATTACCCCGTTCAAGCCGCCAACGAGGCTATCCATGCTCTTTCTACCCTCAAGGATTTGAAATGCATCGCTGCTCTCTCAACCAACTTGGATGATAAGCGTTTTCCTTCACACTTTCGATGCCCTCTCTCCAACCGCTTGATGACAGATCCTGTTATATTGACCACTGAACAGACTTTTGATCGTCCATTCATCCAGAAGTGGCTGGATCAGGTCCACGGAATGTGCCCTATGACCCACCAAGTCCTCTCTCACGCTATTCTTACTCCTAATTTCTCGCTCCAAAGCATGATTTCAAACTGGTGCAAAATGAGCGGAGTTGATATTCCGAAGTCCATTTTTGACATTCACGACGAACAAGTAACCGAGGCACACAGACACCGTCTCCTTTCGTTGCTCGTCAAGCTGTCACTGTCGGTTTCAGAACAGAAAGAAGCTGCAAAAGAGCTTCGCCAGTTAGCAGAACAGATGTCCGGAATTCGATCACTCTTTGGGAACTCACAAATGATTGAGCTATTGACCCGTCCTTTATCATCCGGCACAGCTTCTGTGGATACCGATCTTCAAGAGGATTTGATAGCAACTCTTTTAAATCTCACAATTAACGATGTCAACAAGAGGGTGTTTGTAGAAAACGAAAACGTCCTCACCGTTCTCATTGATTCATTGAAATCCGGAACAGTTGAAACAAGAAGCAATGCAGCTGCAGCTTTTTCCTCATTGTCATCTCTTGCTTCAAACAAGCCCATAATTGGAAAATCTGGGGCTATAAAATACTTGGTGGATTTACTAGAGGAGGGAGACCCATTAGCCATGAAAGATGCTGGTTCAGCCTTGTTCAAACTATGTTTTTCGCGTGAAAATATAGCGAGGACCGTACGAGAAGGGGCAGTGCAGGTTATTCTTAACAAGATCGTTGACCATGTTCTTGTTGATGAGTTGTTGTCACTGTTGGCACTTCTGGGTACACATGCTAAGGCCGTTGAAGAGTTGGTGAGTCACGGTGGTGTCCGTTTCTTGCTTGATATCTTGAGGGAGAACACAGGGGAACGCACCAAGGAAAACATTGCTATTCTTCTAGATCTAATCTGTCACAAGTACCAAGAAAAAAGAGAGGAGATTAAAGAGGAAGAAATGGCCCATGGCACATTCTCTGAGCTTGCACAAAACGGGTCCCCATGGGCTAAAAGGAAAGCTAGCTCCATCCTTTATTGTCTTGGCATACATGATCCCTCCACTTTCCAATACACTCAAGTTTTGTGA 3369 0.4455 MNPSYPSSDLSSTLSSLKNLIALSNHVLSVTPSPPTLNANLIQCPFNPHHLIHPHSLFLHHLRCPSSPRPLPDLTHSLTYPQTLHNSPSDQLSFYLHSLSNFFYRDCPAVVSFSHADSLTRTATLTLPAFLSIECADTDTHSNLERLSHHAPILPSQYFSIARELQSWHDFPTTFSNFVRRAILGLGIANDRDLMDWIIANSPRYGVVVDTSMQQHMFLLCCPCLMSIIREASVSMENKNSHVSCPVSNQALTWLAYQVSILYGAANGKAFVLNFVKKCITVGASVLLLFPLGNEAASMHESHNLDTGSGNIKVAKSAAPGGEKKNCILDRKISVCQVAAAVAALHERSLLEQKIKGFWQQPSNYQLVAEHSYLSEKANEERTKRPDYRPIIDHDGIHRPQLSNQESSREKTREELLAEERDYKRRRMSYRGKKTNQSPLQVMRYMIEDFMEQIKQAEGFESPLKMSEESGLFPFKPPGHDISMEANNSRKASHDSPAVTTSKPHYCEQQSHSNCCDESKNLDGAFSRDYKQLKHERQRSHYYREDQWNADRGKYHRNRSSTSPVRHSSHSQSREHSSHHIKQDYYSNRKKHDNSSRFRDRLQNDTHGSHISDSFPNKTFSDRYDPSESLDICDDDISSDAKYIKSDKDWLGQNRDDTTSVVASIEDKERKSCSAMATTAENEVSALKQKLQDLVKSIVDNDDYPVQAANEAIHALSTLKDLKCIAALSTNLDDKRFPSHFRCPLSNRLMTDPVILTTEQTFDRPFIQKWLDQVHGMCPMTHQVLSHAILTPNFSLQSMISNWCKMSGVDIPKSIFDIHDEQVTEAHRHRLLSLLVKLSLSVSEQKEAAKELRQLAEQMSGIRSLFGNSQMIELLTRPLSSGTASVDTDLQEDLIATLLNLTINDVNKRVFVENENVLTVLIDSLKSGTVETRSNAAAAFSSLSSLASNKPIIGKSGAIKYLVDLLEEGDPLAMKDAGSALFKLCFSRENIARTVREGAVQVILNKIVDHVLVDELLSLLALLGTHAKAVEELVSHGGVRFLLDILRENTGERTKENIAILLDLICHKYQEKREEIKEEEMAHGTFSELAQNGSPWAKRKASSILYCLGIHDPSTFQYTQVL 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00224 1122 CDD RING-Ubox_PUB 738 790 IPR045210 -
Spst10g00224 1122 SUPERFAMILY ARM repeat 839 1117 IPR016024 -
Spst10g00224 1122 PANTHER U BOX DOMAIN-CONTAINING 653 1105 - -
Spst10g00224 1122 MobiDBLite consensus disorder prediction 489 518 - -
Spst10g00224 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 734 810 IPR013083 -
Spst10g00224 1122 MobiDBLite consensus disorder prediction 530 558 - -
Spst10g00224 1122 Coils Coil 677 697 - -
Spst10g00224 1122 MobiDBLite consensus disorder prediction 463 518 - -
Spst10g00224 1122 SUPERFAMILY RING/U-box 733 809 - -
Spst10g00224 1122 Coils Coil 402 422 - -
Spst10g00224 1122 SMART arm_5 946 986 IPR000225 GO:0005515
Spst10g00224 1122 SMART arm_5 819 857 IPR000225 GO:0005515
Spst10g00224 1122 SMART arm_5 904 945 IPR000225 GO:0005515
Spst10g00224 1122 SMART arm_5 1026 1067 IPR000225 GO:0005515
Spst10g00224 1122 MobiDBLite consensus disorder prediction 569 607 - -
Spst10g00224 1122 Gene3D - 818 1118 IPR011989 -
Spst10g00224 1122 MobiDBLite consensus disorder prediction 530 620 - -
Spst10g00224 1122 Pfam U-box domain 738 805 IPR003613 GO:0004842|GO:0016567
Spst10g00224 1122 ProSiteProfiles U-box domain profile. 736 810 IPR003613 GO:0004842|GO:0016567
Spst10g00224 1122 ProSiteProfiles Zinc finger CHHC U11-48K-type profile. 41 68 IPR022776 -
Spst10g00224 1122 MobiDBLite consensus disorder prediction 388 413 - -
Spst10g00224 1122 SMART Ubox_2 740 803 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00224 Spst-Chr10 2193793 2201148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00224 799 1105 U-box Gene Family AT3G07360 50.476 7.00e-83 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00224 K13156 - gmx:100803944 1005.36