Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00217 ATGTTTCTCCCTGTGAGCGCCACGAGTCAGTTCTCAGCATCGATCCTCTGTTATGTTTGCAAGTGTCTATCGCTCACAGATCATGACTCGTTTCCTAAGATGGAAGAAGCAAAGGGAGAAAGAGTAGGGTTGGGAAAAAGGCCACGCTCAAGAAAAGGGTGCATGAAGGGAAAAGGAGGACCCCAGAATGCTACGTGCAGGTACAGAGGAGTGAGGCAGAGGACGTGGGGAAAATGGGTTGCCGAAATACGAGACCCCAAACGCGGCCTTAGGCTTTGGCTTGGCACCTTTAACACCTCCATTGAAGCAGCACATGCATACGACGACGCTGCAAGAAGCCTCTATGGTGCATCGGCCAACCTCAATTTGGGTGCACCTAATAATCACGCTTCACATGATCACTGTTTGAATATCGTTCCTACTGCACAGTCACCACAACCTGATGCTCCAACCCTAGTCGACTCCAAAACTGATGACACTCCCACTGATAATACTACGTTGTTTGAGGAAACGAGCAACATTGAGGGGTTGTTTTGGGAGACTAGTTTGGAGCGTGATACCTGGACTAGTTCTCGAAACTCCATCAGGGATGATTTTCTGGAGCTCAATACGATCGTTCATGGCCTCAACGATTGGGATCGGCGTTAA 648 0.4907 MFLPVSATSQFSASILCYVCKCLSLTDHDSFPKMEEAKGERVGLGKRPRSRKGCMKGKGGPQNATCRYRGVRQRTWGKWVAEIRDPKRGLRLWLGTFNTSIEAAHAYDDAARSLYGASANLNLGAPNNHASHDHCLNIVPTAQSPQPDAPTLVDSKTDDTPTDNTTLFEETSNIEGLFWETSLERDTWTSSRNSIRDDFLELNTIVHGLNDWDRR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00217 215 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Spst10g00217 215 MobiDBLite consensus disorder prediction 38 62 - -
Spst10g00217 215 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Spst10g00217 215 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Spst10g00217 215 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Spst10g00217 215 MobiDBLite consensus disorder prediction 143 166 - -
Spst10g00217 215 SUPERFAMILY DNA-binding domain 67 124 IPR016177 GO:0003677
Spst10g00217 215 CDD AP2 66 122 IPR001471 GO:0003700|GO:0006355
Spst10g00217 215 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Spst10g00217 215 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Spst10g00217 215 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Spst10g00217 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 46 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00217 Spst-Chr10 2115673 2116420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00217 49 126 AP2-EREBP Transcription Factor Family AT5G18450 79.487 9.35e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst10g00217 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00217 - - cpap:110814864 152.525