Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00209 ATGGCGAACCGGTGGTGGGCCGGGTCTGTGGGTCTAGAGAACTCTGGTGACTCCATGAGAAAACCGGATCTGGGGTTTTCTATGAACGAGAGTGCGGTCACTGGGAACCAAGCGGGGGAAGAAGAAGAGGAGAAAGAAAACAGCGACGAGCCCAGAGAGGGAGCTATTGACGTCACCAACACGCGCCGCCCGAGGGGTCGTCCACCGGGGTCCAAGAACAAGCCCAAACCGCCGATATTCGTCACCCGAGACAGCCCTAACGCGCTGCGGAGCCACGTCATGGAGATAGCCAGCGGCGCCGACATCGCCGACTGTGTGGTCCAGTTCGCACGGAGGCGCCAGCGCGGCGTGTCCGTTCTCAGCGGGAGCGGCGCCGTCGTCAACGTCACTCTCCGCCAGCCCACCGCGCCCGGCGCCGTCATGGCGCTCCACGGGCGCTTCGACATCCTCTCCCTCACCGGCTCGTTTCTTCCCGGGCCGTCCCCGCCCGGGGCCACCTGTCTCACCATCTACCTGTCCGGCGGCCAGGGACAGATCATCGGCGGCGGCGTGGTGGGCCCGCTGGTGGCGGCTGGTCCCGTTTTGATAATGGCGGCTACGTTTTCCAATGCAACGTACGAGAGATTGCCCTTGGAGGAGGATGATCAGGAGCAGGGCGGTGGCGGCGGGTCTCCGCCGGGGATGGGAGGCGGTCCCGGCGAAGCGACGTCGTCTATTTCAGTGTATAACAATAATGTTGGTCCGAGTTTGGGTCTTCCGAATGGTCAACAGGTGAACCATGAAGCTTATTCTTCTCCTTGGGGCCATGCTCCTCATGCCAGACCTCCTTACTAG 834 0.6271 MANRWWAGSVGLENSGDSMRKPDLGFSMNESAVTGNQAGEEEEEKENSDEPREGAIDVTNTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEIASGADIADCVVQFARRRQRGVSVLSGSGAVVNVTLRQPTAPGAVMALHGRFDILSLTGSFLPGPSPPGATCLTIYLSGGQGQIIGGGVVGPLVAAGPVLIMAATFSNATYERLPLEEDDQEQGGGGGSPPGMGGGPGEATSSISVYNNNVGPSLGLPNGQQVNHEAYSSPWGHAPHARPPY 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00209 277 ProSiteProfiles PPC domain profile profile. 86 226 IPR005175 -
Spst10g00209 277 MobiDBLite consensus disorder prediction 1 86 - -
Spst10g00209 277 CDD DUF296 90 165 IPR005175 -
Spst10g00209 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 236 IPR014476 GO:0003680
Spst10g00209 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 203 IPR005175 -
Spst10g00209 277 Gene3D - 89 218 - -
Spst10g00209 277 MobiDBLite consensus disorder prediction 213 277 - -
Spst10g00209 277 FunFam AT-hook motif nuclear-localized protein 89 216 - -
Spst10g00209 277 PIRSF ESCAROLA 12 277 IPR014476 GO:0003680
Spst10g00209 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 215 - -
Spst10g00209 277 MobiDBLite consensus disorder prediction 236 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00209 Spst-Chr10 2066953 2067786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00209 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.362 2.21e-86 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00209 - - gmx:100797639 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00209 10 2066953 2067786 Spst10g00209 10 2066953 2067786 ECH