Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00198 ATGACGACACCACCGTCTTCCTCCTCAGCTTCGCAATCGCAATTTGCGTATTCAAACCCTTCCTATTTCCCCGTCCCCTTTCACCTGCAGCAACCCGCAACCACACACTACGCTGCACCATACGTCGCCGCTCCCTCTGTGCAAATCCCCGCTCCTCCCGTCGTCGGTCCGGTTGCGCCGGCACCGGTTCCTGGTGTGTACTCCGCCGTGCCGCAATATCAGGCGCAGCAGTTATTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCTCTTGAGAATGTTAAAGCGGCGATTGCGAGCAGCGACGTGGAGCACAAAACCGATGCCAAAAGGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAATCATGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGATGACTATCGGCTCTTCTGTGGTGATCTTGGTAACGAAGTGAATGATGATGTTCTTTCAAAAGCTTTTTCCCGATTTCCTTCCTTTAACATGGCGCGAGTTGTCAGAGATAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTTAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATAAAACTACGCAAGAGTAATTGGAAGGAGAGGACTGATTATGAAGCACTGGAGAAACAGAAGAATCACATTCAAAAGAAGCCAAAAATGTCTAGGAAAGGGGTGCTGCACAAGTGA 735 0.4966 MTTPPSSSSASQSQFAYSNPSYFPVPFHLQQPATTHYAAPYVAAPSVQIPAPPVVGPVAPAPVPGVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKRKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEALEKQKNHIQKKPKMSRKGVLHK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00198 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 65 222 - -
Spst10g00198 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Spst10g00198 244 CDD RRM_RBM42 130 212 IPR034215 -
Spst10g00198 244 FunFam RNA-binding protein 42 71 221 - -
Spst10g00198 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Spst10g00198 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
Spst10g00198 244 MobiDBLite consensus disorder prediction 225 244 - -
Spst10g00198 244 Gene3D - 83 233 IPR012677 -
Spst10g00198 244 SUPERFAMILY RNA-binding domain, RBD 119 216 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00198 Spst-Chr10 1988306 1991369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00198 138 225 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 2.59e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00198 K25079 - gmx:100791946 437.573