Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00195 ATGGTTATATGTGTTGTCACAGGTAATCGGGGAACTTCATATGCATATCTGGGAAGACCATGGAGACCTTTTGCAAGAGTGGTTTTTGCATTCACTTTCATGGATCAATGTATAAAGCATGCAGGGTGGAATAATTGGGGCAAAGTGTTCTGGACTGGGTTTCGTCCATCCCAAAGAGTGAAATGGGCCGGAGAATTGAAGAATGAAGGAGTTGAGCAGTTTCGAGTCACACCTTCATTGATCCAGAATCAGACAGATCTTGGCTTCCTCAAAGAATGA 279 0.4337 MVICVVTGNRGTSYAYLGRPWRPFARVVFAFTFMDQCIKHAGWNNWGKVFWTGFRPSQRVKWAGELKNEGVEQFRVTPSLIQNQTDLGFLKE 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00195 92 Gene3D - 1 88 IPR012334 -
Spst10g00195 92 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 75 - -
Spst10g00195 92 Pfam Pectinesterase 10 50 IPR000070 GO:0030599|GO:0042545
Spst10g00195 92 SUPERFAMILY Pectin lyase-like 6 68 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00195 Spst-Chr10 1927061 1928251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00195 4 79 Carbohydrate Esterase AT5G49180 32.632 6.39e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00195 K01051 - gmx:100810259 120.938