Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00189 ATGTCTGCTAATCCCAGAGTCATCAAGGCTTTTAATGCTATGAGGTCCTTAGGAATTTCTATTGAAGAGGTGAAACCGGTGTTGAAAAAGTTGTTAAAATTGTATGATAGGAACTGGGAACTTATTGAAGAAGACAATTATCGTACACTTATAGATGCATACTTTGAGTTAAAGCAAGATAAGCAAGCAGAAGTTAAGAGAAAAGCTCCAATCGTTTATCTTGATGAGGGAAGGCCAAAACAGAAACTGCACTTGGTAGGTGGAGATGATCAGATTTCCTCAACTGACATCTCAAAACAAGGGTTGTCTGTAGAAGACGCGGAAATACCTCCCAAGGCTTATAAACAGAAGATCACTAAGCCTTTTCAAACCTCCATTGGGGATATGGAGCCCACAACCAGTTCACAAGCATTACAAACAACGTTGAGTGGGGTAGAAAGAATATCAACTTTACCTGACATGGCTATTAGAGAGAAAAAATTGCATCATGAGACAGCATCAGCTTCCAGGCATCGTGAAGATCCAATAGATGAATCAAGAAATCCTCGTATCCAAAGGAAAAATATGTCAAGTGATAATCATAAGAAGGAGCTGATGACAGCAAGAACTGAGAAACCTAAGTTACATCTTGGACCTGTTTCAACGAGTTACAATGGCTCACCTGACGCTTCTAGTCGTGCCAAAGCTCTATCAGCTACGTATCAGAATGTGCGCAAGAAATATGGTAGCTCATCAGGCAATAATATCAATATAATTCAGAAAGGTAATATTGACATTGCTTCTTCACTTTCGGGAGAAATTAAAATTTCTTTGAACTGCGATGCTGCTTTGCGACAACCAAACTTTAGTATTCCGAATTTGGACGCTGTTATGAAGTCCGTGGAAGAAAAATACCTTAAGGATTACAAGATAGTAAAGCCTCAATCATCTATGGGGAAGCTATTAGATGATTTATGTGAATATTACTTGAAGCTGGGCTTGAATAATAATTCCTCTCACTTTCTCGATGACATTACAAAAGGTTCTGAGAATGTTAAAATATCATTGTTGGATGAATCTGGAATTGAGGATTTGCCAAAGTTTAATTACATAGCAAATAATGTAATATATCAAGATGCTAACGTAAATATTTCACTTGCTCGTATTGCTGATGAGGGTTGCTGTGCTAACTGTGCTGGCGACTGTCTTTCATTACCGCTTCCCTGTGCATGTTCTCAAGAAACAGGTGGAGAGTTTGCTTACACTCCACAAGGTTTGCTGAGAAATGATTTTTTAACAGCTTGCATATCTATGAAATTGGAACCTCAAGATCATCATTTTGTGTATTGCCAAGAATGCCCACTGGAGAGATCTAAGAATGACATCCTTCCTGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTATGTTGTAAATTGCAGGTGTTTTTGACTCGTGAAGGAAAGGGATGGGGCGTCAGAACACTAGAAGATTTGCCCAAGGGATGTTTCATATGTGAATATGCTGGGGAGATATTAACCAATACAGAATTATTTGAAAGGATTGTGCAGAATGGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCGGAAGGGGTTTTAAAGGATGAGGAGGCACTATGCTTAGATGCAACATATAATGGAAATGTTGCAAGATGTTTGGACGCAAATCTGATAGACATTCCTGTTGAAGTAGAGACGCCTGATCGTCACTATTATCACCTTGCCCTCTTCACAAACAGAAATGTGAATGCGTACGAGGAATTGACATGGGACTATGGTATTGACTTCGATGATCACGAGCATCCCATTAAGGCATTTAAGTGTTATTGTGGAAGTGCCTCATGCCGTGATAATAAAAAAAAGAAGAGGTCAGTAAGATAA 1968 0.3968 MSANPRVIKAFNAMRSLGISIEEVKPVLKKLLKLYDRNWELIEEDNYRTLIDAYFELKQDKQAEVKRKAPIVYLDEGRPKQKLHLVGGDDQISSTDISKQGLSVEDAEIPPKAYKQKITKPFQTSIGDMEPTTSSQALQTTLSGVERISTLPDMAIREKKLHHETASASRHREDPIDESRNPRIQRKNMSSDNHKKELMTARTEKPKLHLGPVSTSYNGSPDASSRAKALSATYQNVRKKYGSSSGNNINIIQKGNIDIASSLSGEIKISLNCDAALRQPNFSIPNLDAVMKSVEEKYLKDYKIVKPQSSMGKLLDDLCEYYLKLGLNNNSSHFLDDITKGSENVKISLLDESGIEDLPKFNYIANNVIYQDANVNISLARIADEGCCANCAGDCLSLPLPCACSQETGGEFAYTPQGLLRNDFLTACISMKLEPQDHHFVYCQECPLERSKNDILPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLCCKLQVFLTREGKGWGVRTLEDLPKGCFICEYAGEILTNTELFERIVQNGGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARCLDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDHEHPIKAFKCYCGSASCRDNKKKKRSVR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00189 655 Gene3D - 1 60 IPR043017 -
Spst10g00189 655 FunFam SET-domain containing protein lysine methyltransferase family protein 338 647 - -
Spst10g00189 655 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 6 653 - -
Spst10g00189 655 Pfam Ubiquitin-binding WIYLD domain 5 58 IPR018848 -
Spst10g00189 655 CDD SET_SETDB-like 359 622 - -
Spst10g00189 655 Pfam SET domain 505 622 IPR001214 GO:0005515
Spst10g00189 655 Gene3D SET domain 338 647 IPR046341 -
Spst10g00189 655 SMART preset_2 335 477 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst10g00189 655 Pfam Pre-SET motif 338 485 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst10g00189 655 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 651 IPR025776 -
Spst10g00189 655 MobiDBLite consensus disorder prediction 162 224 - -
Spst10g00189 655 MobiDBLite consensus disorder prediction 162 204 - -
Spst10g00189 655 ProSiteProfiles SET domain profile. 493 622 IPR001214 GO:0005515
Spst10g00189 655 ProSiteProfiles Post-SET domain profile. 633 649 IPR003616 -
Spst10g00189 655 ProSiteProfiles Pre-SET domain profile. 387 490 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst10g00189 655 SMART set_7 493 628 IPR001214 GO:0005515
Spst10g00189 655 SUPERFAMILY SET domain 357 645 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00189 Spst-Chr10 1830458 1835183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00189 469 645 C2H2 Transcription Factor Family AT2G23740 37.634 9.15e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst10g00189 Pre-SET 5.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00189 - - gsj:114402909 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00189 10 1830458 1835183 Spst10g00189 10 1830458 1835183 ECH
Spst6g00487 6 4453124 4456269 Spst10g00189 10 1830458 1835183 PCT