Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00185 ATGAGGTGCCAAATTTCTCTCATTCACTACCAATCAGATCCTATGGCTTCACAGCCTCCTTTGACTGGTTATGTGCCTCATGCATCATATGCTACAAAATCATATTCTCTAGTGACTCCCATGATTCCAGCAAACAGTTGGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAAATCTTCAGGGGGATGATTTGGAAACTGCTGTTGCTGAAGAGATGTCTACGTTTAAAGAAGAATGGGAAGTTGTTCTGGATGACCTTGAAACAGAATGTGCTCACTTACTGGAACAACTTGATGGGGCTGGCATTGAACTTCCTAGCCTTTATAAGTTGATTGAAAAAGAAGCTCCTAATGTTTGCTCCACTGAAGCTTGGAAAAATAGGAATCACTGGGTTGGCTGTGTGGCAACTTCTGAAATTGCTGAGTCAGTTGCTGATGCTGAGAAGCATTTACAAGTAAACAGACCGGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAAGAGCCAGTGAAGAACGAAACTGCGCGGGATTGGGATATGTTCAATAAAATAGTTTCTGATGGGAGTGGTATTGATGCTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATCTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCAGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGAAATTCTATGGATCCATTTATTGCAGCTGCAATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGTCGCCTATGCATAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCGTTTGAAACATAGGAGGTATAAAAAGATAAGTAAACAGGGAGAAATGAGCATACCTATCCTGTTGACGGAGAGCCCCACACAGAATCCTTCATCTGTTGATCATTTAAACCCTGTTATGAAAGAAGGAATTACTGATGATGGGAAAAGAGTGTCTGACAATGGCAAGGATACATGTGTTCTTCTGGAGACTAATAATAATAAAGGTTTTGATACTAGTCATCATCTTGACCAAGAAAAGCTTAGAAGTAATGGTGGCTTGTCAGATCCACTCAAATCCTCAGTGGATGATGTTATTGAACAGAGAGGAATCAAACGTGCAAGCAGTAGTGAGGTTGATGCTGACAATAAAAAATGTCGGATTCTTATTATTGACAGTGATAATGAAGCAGAGGTCATCAAAGAGAAATTAGATGGCAATACTCAAGAAGTAAAAGACGAATTACTTAACAATGGTACTGGTTCTCTTCCTTTGGAGCGTCTGGAAGAAAACTTTTTGTGCACAGTTTGTGATAAAGTGGCTCTTGAAGTGCATCCACACCCTCTCTTGAAAGTAATTACTTGTGAAGATTGCAATTGCTTATTAAAGGAAATGACACATCAAAAGGATCTGGGACAAGATTGTTCGGAGGGTTACTGTACATGGTGTGGAGGAAACAATGAATTAGTTAGTTGTAAATTATGCAATATATTATTCTGCACCAAATGTTTAAAGAAGAATCTTGGTGTAGAATTGGTTCCTGGAGATCAGGCCTCTAGCCGGCATTGTTGTTGTTGCCACCCAAATCTTCTGCAAAGACTATCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTAATGTAATAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGATAATTCAGATAATTCAGATGATTCAGATGATTCAGATGCACAGATTAATGTTACAATGAGCTCCAAGCGAAGACACAAAAAGAAGATTCGTAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAGAGGAAAATAGCAATCGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTAAGAGGGCAGTTTTCTGCTTCGTCAATTGAGATGTGCTCTGATGGGTGTAATAGGAATTTATCAGAAGGTGCAACTGTTGAAGTTCTTGGAGATGCACAAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCAGCTAAGCTAAAGGCCCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCTATCAGGAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATCTGGGTTTAAGAACTGCGCTTATAGTCACACCTGTCAATGTGCTACATAATTGGCGGCAAGAGTTCATTAAATGGAGACCTTCTGAGTTAAAGCCACTCAGGGTCTTCATGCTGGAAGACGTATCAAGAGATAGAAGAGAAGAATTGCTTGCAAAATGGAGAGCTAAAGGTGGTGTGTTTTTGATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGCACATGGCCAGAGAAATTTGCCATGCTTTGCAGTGTAAAGATGCCTTTGCATTCACCAGAAGGCTGCTGGAGATGGGATATACTGGGGAAAGTCAAGGAGATATGGCAGCCACAACAGAGAGGAAAGAACAGGACATTGAATATTGCAGCACCGATGGTCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCCGATGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCTCTTACTGGATCACCGCTTCAAAACAATCTCATGGAATATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGGCAAGGCTTTCTTTCCACATTCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGATCGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAAGAATTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCGCCCAAAACTGTCTTCGTGATAACTGTCAAGCTTTCACCCTTGCAGAGAAAATTGTACAAGAGATTTCTTGATGTGCATGGGTTCACTACGCAGGAGCATCCTGAATTGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCAGGGATCTTGCAGTTGACAAAAGAAGCAAAGGATTATGCAAAAGATGAAGATGCTGTTGAGAATTTCCTTGTGGATGATAGTTCCAGTGACGAAAATTCCGATTATAATGTTCTTGCTGGAGAGAAGATGGGGTATGCAAATGACTTGCTGCAAAGGAAAGATGGTAATGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCATGGCAAAATATATAAAGAGATTGATCACAGTGGTAAAATGGTTTTGCTGATGGAGATACTAACAATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACACTAGACCTGATTGAACTTTATCTCTCAAGGATACCTCGACGTGGCAAACGAGGAAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGTTGGACGGAAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGTACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTAGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGACAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTAACAAAAGAGGGGCTTGCTGCTAGGGTCGTTGACAGGCAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGATGACAACCCTGAGACTTTGGGTGATCTGGGTCAAGAAAATGGGCATCAAGACAACCCAATTATGGTTGGGCATTCTCTGAAACACACAGCGCCGCATTCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCATGGTGGATTGCCCATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGAGGAAAAACTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAATCACTGGAATGGGAAGAAGTCCAGAGAGTACCACTAGGTGAGTCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATACTGTGCCCCATGTATCAGAAACCTGCAACATCTTGCCAAGTAAACTAAGCAGACGTTTTGCGTCCCGGAAATGCACCAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGTACAAAATTTGGTTGCAGTACTGTCTGTGGGGAATGCGCCCAGGAGATTAGGAAGAAAGATGTAAGATCTGCTGCTTCTGCACTAAGAGGACTGGCAATCAAGAAGTTGATTATTAACCCTAAATCAACACCATTTCAACTAAAACATCAGACAACTACAGTTCTTCACGTCACCAAGAATGACATAAGCGTTGCTACTATGTATGATATACCCCCTTTACATTTTATAGATGATGATGTCGATGTCTTATCCCACTTCACCTCTCCCACAGTGAAACAAAGAACACATACTAACCAGGATATAAAGAGTTAA 4833 0.4086 MRCQISLIHYQSDPMASQPPLTGYVPHASYATKSYSLVTPMIPANSWAAEAQEALEEESLSKVESEVRQELKQNLQGDDLETAVAEEMSTFKEEWEVVLDDLETECAHLLEQLDGAGIELPSLYKLIEKEAPNVCSTEAWKNRNHWVGCVATSEIAESVADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKNETARDWDMFNKIVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKSPMHKVKEEDDAIVDKKLQIRLKHRRYKKISKQGEMSIPILLTESPTQNPSSVDHLNPVMKEGITDDGKRVSDNGKDTCVLLETNNNKGFDTSHHLDQEKLRSNGGLSDPLKSSVDDVIEQRGIKRASSSEVDADNKKCRILIIDSDNEAEVIKEKLDGNTQEVKDELLNNGTGSLPLERLEENFLCTVCDKVALEVHPHPLLKVITCEDCNCLLKEMTHQKDLGQDCSEGYCTWCGGNNELVSCKLCNILFCTKCLKKNLGVELVPGDQASSRHCCCCHPNLLQRLSLQLEKAVGSANVIVSSSSSDSDDSDNSDNSDDSDDSDAQINVTMSSKRRHKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSIEMCSDGCNRNLSEGATVEVLGDAQAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRREELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHMAREICHALQCKDAFAFTRRLLEMGYTGESQGDMAATTERKEQDIEYCSTDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRQGFLSTFFQNPIENGQHTNSTLIDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPELLRKRCFFAGYQALARIWNHPGILQLTKEAKDYAKDEDAVENFLVDDSSSDENSDYNVLAGEKMGYANDLLQRKDGNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGDLGQENGHQDNPIMVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPWWIAHYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIVPIQKPEIPNTVPHVSETCNILPSKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRKKDVRSAASALRGLAIKKLIINPKSTPFQLKHQTTTVLHVTKNDISVATMYDIPPLHFIDDDVDVLSHFTSPTVKQRTHTNQDIKS 1610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00185 1610 ProSiteProfiles ADD domain profile. 467 599 IPR025766 -
Spst10g00185 1610 Coils Coil 92 119 - -
Spst10g00185 1610 MobiDBLite consensus disorder prediction 379 405 - -
Spst10g00185 1610 SMART helicmild6 1201 1298 IPR001650 -
Spst10g00185 1610 Gene3D - 1035 1375 IPR027417 -
Spst10g00185 1610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1178 1346 IPR001650 -
Spst10g00185 1610 Gene3D - 694 871 IPR038718 -
Spst10g00185 1610 PANTHER RAD54-LIKE 32 1528 IPR044574 GO:0016887
Spst10g00185 1610 Coils Coil 1414 1434 - -
Spst10g00185 1610 Pfam Helicase conserved C-terminal domain 1174 1298 IPR001650 -
Spst10g00185 1610 Pfam SNF2-related domain 746 1093 IPR000330 GO:0005524|GO:0140658
Spst10g00185 1610 SMART ultradead3 719 979 IPR014001 -
Spst10g00185 1610 Gene3D - 891 1010 IPR038718 -
Spst10g00185 1610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 968 IPR014001 -
Spst10g00185 1610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1364 IPR027417 -
Spst10g00185 1610 MobiDBLite consensus disorder prediction 594 628 - -
Spst10g00185 1610 CDD SF2_C_SNF 1166 1309 - -
Spst10g00185 1610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 1024 IPR027417 -
Spst10g00185 1610 CDD ADDz_ATRX 475 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00185 Spst-Chr10 1768411 1797520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00185 753 1351 RAD5 or RAD16-like Gene Family AT5G43530 24.593 2.30e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst10g00185 SNF2_N 2.1e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00185 K10779 - gmx:100794911 2444.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00185 10 1768411 1797520 Spst10g00185 10 1768411 1797520 ECH