Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00179 ATGGAACAAGAAGAATATACAAAGGAGCAGATCAATTGGAGCTACATCGAATTTGTTGACAATCAAGATGTTTTGGACCTTATTGAGAAGAAACCTGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTTCCAAAATCAACTCATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACAGATTTCACAATTGCTCATTATGCTGGGGAGGTATTGTACCAGTCTGACCAATTCTTAGATAAAAACAAGGACTATGTGGTTCCAGAACATCAAGATTTGTTGAGTGCTTCCAAATGTTCTTTTGTTTCTGGCCTTTTTCCACCACTCCCAGAAGAGACATCAAAATCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAAAGCCTGATGGAGACATTAAATTCTACAGAACCCCATTACATTAGATGTGTCAAACCAAACAACCTTCTCAAGCCTGCAATTTTTGAGAATAACAATATTATGCAGCAACTACGCTGTGGTGGTGTTTTGGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCCTTCTTTGAATTTATAAACAGATTTGGCCTCCTTGCCCCAGAGTTCATGGAAGCAAACTGTGATGAAAAGACTGGTTGCCAAAAGATTCTGGAAAAGATGGGGCTTAAAGGATATCAGATTGGAAAAACGAAGGTGTTCTTGAGAGCAGGTCAGATGGCTGAACTAGATGCTCAGAGAGCTCAAGTACTTAGTAATGCAGCAAAAGTTATCCAAAGGCGTGTGCGAACCCATCAAGCTCGCAGACATTATCTTGCATTGCGAAAGAAGACCATATACTTGCAGTCTCGGTGGAGAGGAAGACTTGCATGCAAACTCTATGACCACTTGAGAAGGGAAGCTGCTGCTATGAAAATCCAAAAGAACATACGCAGATATGAAGCTAGGAAAGCGTATAAAGAACTTCATGTGTCAGTACTTACACTACAAAGAGCTATAAGGGCCACTGCTTCTCGCAAGGAATTCAGATTTAGGAAGCAGACTAAAGCTTCCATCATCATTCAGGCTGCAAAAGAAACTGGTGCCCTACAAGAAGCAAAGGATAAACTTGAAAAGCGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAAAAAGGTTTAAGGACCAATCTAGAAGAATCCAAAGCCCAGGAGATAGCAAAACTGCAGAATTCATTGCAGGAGATGCAGAGCAAATTCGATGAAACTAATGCTCTGCTCATCAAAGAGCGAGAGACTGTAAAGAAAGTTGTTGAAGAAGCACCTCCTGTCATTCAAGAAACACAAGTTATTGTTGAAGATACACAGAAGATTGAGACACTGACAACAGAAATTGAGAGCCTAAAGACTTCACTTGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAAGAAAATACAATGAAGCCCAAGTTTGTATTGAAGAAAGAGGTAAAAAACTAGAAGAGATGGAGAAGAAGGGTCGTCAACTTCAAGAATCATTGACTAGGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAGGTATTACGTCAACAAGCTGTGTCCATGGCACCTAATAAGTTCCTTTCAGGACGTTCAAGATCAATCATCCAGAGAACTGAAAGTGGTCATATTATACCGGAAGCGAAGACACCTATGGCTAATCAGGAAATGCATAGCACATCAATGCATCGGAGGGAACCCTCTGATGGCTTCGATGATAAACCACAAAAGTCACTAAATGAGAAACAACAAGAGAATCAAGAGTTACTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGGAACAGACCAATTGCTGCCTGTATCATATACAAATGCTTGTTGCACTGGCGATCATTTGAAGTTGAACGTACTAGCGTTTTTGATCGAATCATCCAAACTGTCGGCCATGCAATTGAGACCCAGGATAACAATGACGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTGTTACTCCAGCGCACGCTCAAGGCTAGTGGTGCTGCTGGAATGGCTCCACAACGTCGTCGTTCTTCATCAGCAACCTTGTTTGGGAGGATGACTCAAAGTTTCCGTGGAACTCCAACTGGAGTAAATCTTTCCCTAGTCAATGGTAGCGCAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTATCCTGCACTGCTTTTTAAACAACAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGATAATTTGAAGAAAGAAATTTCTCCCTTACTCGGATTATGCATCCAGGCACCAAGAACATCCAGAGCAAGCCTTGTTAAGGGATCATCACGTTCTGTTGCAAACACTGAAGCCCAGCGTGCTTTGATTGCTCATTGGCAGGGGATTGTGAAGAGCCTAGGAAACTTTCTAAATACTTTGAAAGCTAATCATTATGCAGGTTCTGCCTGGGATGAGCTCAAACATATTAGACAAGCAATTGGATTTCTGGTCATACATCAGAAACCAAAGAAAACATTGGATGAAATAAGCCATGACCTGTGCCCAGTCCTCAGTATACAGCAGCTGTATCGGATAAGCACCATGTACTGGGATGACAAATATGGAACGCATAGTGTGTCCTCTGATATAGATATTGCAGATATAGAGCCTCCGCCATTAATTCGTGAAAACTCTGGGTTTAGCTTTTTGTTGCCGCGTCCAGATTGA 2781 0.4124 MEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCSFVSGLFPPLPEETSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENNNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGLLAPEFMEANCDEKTGCQKILEKMGLKGYQIGKTKVFLRAGQMAELDAQRAQVLSNAAKVIQRRVRTHQARRHYLALRKKTIYLQSRWRGRLACKLYDHLRREAAAMKIQKNIRRYEARKAYKELHVSVLTLQRAIRATASRKEFRFRKQTKASIIIQAAKETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKLQNSLQEMQSKFDETNALLIKERETVKKVVEEAPPVIQETQVIVEDTQKIETLTTEIESLKTSLESEKQKADDFERKYNEAQVCIEERGKKLEEMEKKGRQLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRTESGHIIPEAKTPMANQEMHSTSMHRREPSDGFDDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTVGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPTGVNLSLVNGSASRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQRALIAHWQGIVKSLGNFLNTLKANHYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDIDIADIEPPPLIRENSGFSFLLPRPD 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00179 926 MobiDBLite consensus disorder prediction 576 607 - -
Spst10g00179 926 Pfam Myosin head (motor domain) 2 252 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00179 926 SMART iq_5 266 288 IPR000048 GO:0005515
Spst10g00179 926 SMART iq_5 289 311 IPR000048 GO:0005515
Spst10g00179 926 SMART iq_5 314 336 IPR000048 GO:0005515
Spst10g00179 926 SMART iq_5 337 359 IPR000048 GO:0005515
Spst10g00179 926 Gene3D - 318 369 - -
Spst10g00179 926 Gene3D - 266 317 - -
Spst10g00179 926 ProSiteProfiles IQ motif profile. 338 367 IPR000048 GO:0005515
Spst10g00179 926 SMART MYSc_2a 1 265 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00179 926 Coils Coil 369 396 - -
Spst10g00179 926 ProSiteProfiles Dilute domain profile. 655 914 IPR002710 -
Spst10g00179 926 MobiDBLite consensus disorder prediction 584 606 - -
Spst10g00179 926 Gene3D - 1 155 - -
Spst10g00179 926 ProSiteProfiles Myosin motor domain profile. 1 264 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00179 926 ProSiteProfiles IQ motif profile. 267 294 IPR000048 GO:0005515
Spst10g00179 926 PANTHER MYOSIN 1 899 - -
Spst10g00179 926 Coils Coil 408 435 - -
Spst10g00179 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 317 IPR027417 -
Spst10g00179 926 Pfam DIL domain 835 890 IPR002710 -
Spst10g00179 926 Gene3D Kinesin motor domain 156 198 IPR036961 -
Spst10g00179 926 Coils Coil 467 543 - -
Spst10g00179 926 ProSiteProfiles IQ motif profile. 290 319 IPR000048 GO:0005515
Spst10g00179 926 Gene3D - 199 262 - -
Spst10g00179 926 ProSiteProfiles IQ motif profile. 315 344 IPR000048 GO:0005515
Spst10g00179 926 SMART DIL_2 783 893 IPR002710 -
Spst10g00179 926 Pfam IQ calmodulin-binding motif 317 336 IPR000048 GO:0005515
Spst10g00179 926 Pfam IQ calmodulin-binding motif 269 287 IPR000048 GO:0005515
Spst10g00179 926 FunFam unconventional myosin-Va 269 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00179 Spst-Chr10 1685958 1696044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00179 1 926 Myosins gene family AT1G54560 69.043 0.0 1443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00179 K10357 - gmx:100816792 1625.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00179 10 1685958 1696044 Spst10g00179 10 1685958 1696044 ECH
Spst1g03020 1 38844044 38847300 Spst10g00179 10 1685958 1696044 PCT
Spst6g00479 6 4399327 4408676 Spst10g00179 10 1685958 1696044 PCT