Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00178 ATGCACATTGGGATTTTGGATGAGTATAGGAAAGAGGATTGGAGTTCAACGGGGACTCCCGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGAGGTATCTTGGATTGATGGACAGGTATTAAAAATCAATGGAAAGGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTTTGTAGACTGTCAGAGCGCTATGTACTTGGTTCAGTTAATGCAAATTTATCAAAAATATATCCTAAGGATATGGAAGCTCCTCCTGGTGGAGTGGACGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTCTTGCAGAACTTAAAGGCTAGATATGAATTGAATGAAATATACACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGACTACCTCATATTTATGGTGCGCATATGATGACACAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATCGGGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTAGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAGTATCTTGCTTTCTTAGGTGGTAGGGCTGGTACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGGAATGCTAAAACTGTTAGGAATAACAATTCTAGTGGAAGAATATCGGGAGCAGCCATCCGAACATATCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAAAGGAATTACCATTGCTTTTATCTTCTTTGCGCTGCACCACAGGAGTCAAAATGCTATGAACTGGCTGAAATAAGTGATGCTCGTGAATATCTTGCCACCCGGAGAGCTATGGATGTTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGAATTTACCAAAGGAAAGGATGTTGACTCATCGGTTCCAAAAGATGACAAAGCCAAATTCCACCTGAAAACAACTGCTGAGCTTCTCATGTGTGATGCTGATGCCTTGGAAGACGCATTATGTAAGCGAGTCATGATCACCCCTGAAGAAGTTATAAAAAGGAGCCTTGACCCCCAAAGTGCTGCTGTGAGTAGAGATGGATTGGCAAAAACGATTTATTCTCGGCTATTTGACTGGCTGGTGGACAAGATTAATAATTCAATTGGACAAGACCCCAAATCTAAATCTTTGATTGGTGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGGTAA 1329 0.395 MHIGILDEYRKEDWSSTGTPVNIIVGSHVWIEDPEVSWIDGQVLKINGKDAEIETTNGKKVCRLSERYVLGSVNANLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYGAHMMTQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQESKCYELAEISDAREYLATRRAMDVVGISQKDQEAIFRVVAAILHIGNIEFTKGKDVDSSVPKDDKAKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINNSIGQDPKSKSLIGVLDIYGFESFKSNR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00178 442 PRINTS Myosin heavy chain signature 426 442 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 PRINTS Myosin heavy chain signature 224 251 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 PRINTS Myosin heavy chain signature 177 202 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 PRINTS Myosin heavy chain signature 120 139 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 Gene3D Kinesin motor domain 28 310 IPR036961 -
Spst10g00178 442 PANTHER MYOSIN 82 441 - -
Spst10g00178 442 SMART MYSc_2a 85 442 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 Pfam Myosin head (motor domain) 92 441 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 24 85 IPR004009 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 Pfam Myosin N-terminal SH3-like domain 25 61 IPR004009 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 ProSiteProfiles Myosin motor domain profile. 90 442 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst10g00178 442 Gene3D Myosin VI head, motor domain, U50 subdomain 311 441 - -
Spst10g00178 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 441 IPR027417 -
Spst10g00178 442 FunFam Myosin 2 309 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00178 Spst-Chr10 1681017 1685663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00178 18 441 Myosins gene family AT1G54560 79.780 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00178 K10357 - gmx:100792816 765.377