Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00176 ATGGAGTGCAACAAAGACGAGGCTGGGAGGGCTAGGCAAAAATGGCCGAAGCTAGAATGCAAAGAGATTGAAAAGTTGGCTGATGAAGCAGTCATAAAGAAACAGTACAGGAGGCTTGCATTGCTACTTCATCCTGATAATAACAAGTTTGCTGGCGCAGAAGCTGCTTTCAAGTTGATTGGGCAAGCCAATGGAGTGCTGAGTGACCGAGCAAAACGTTCTTCGTTTGACAAGAAGTTTGGAATCTCTGCGAGAGGTGCTGCGCCGAAGGCAACTGCAAAAAAACATCAGAAGAGTTCTGAAACACACCATAATTCAGATGGAAATGTGTTTACTGCAAAATATGATGAAAATGCAACAAATTATCAGAATAAATCTTTTTCGAACTCCGATTGTTTCAACAACCAAGTTGGACTGATGACATTCTGGACATCTTGCGAACATTGTAATTCGAATGGGTGTCTCACCGTCAATGTTTACTTCAGAAAACGTACTGCCATGTTTGCGCGGTCAAATACTGCTATGAAAAAATGTGCTGCTGGAGTTGATGCTCATTGTGAAGCTGAAAAGAGTAAAAATGGCTGTGTTCCTGTATTCAAAGGCATGGAGTCACAATCATATAAAAATGTTGGAAGTAAGAGAGTAAGGCAGTCAGCACCAGATTCAGGAGAAATCTTCAAAGCTAGAACTGGTGATGAGATGAGAGATGCCAATGACCGAGAAAACGTTCTTGATCCTTCAAGAGTTAATGCTAGGAGATCTACAAGGAAAAAACATGTTTCATATGTGGAAACCTTTGAAGGTGACGATCTCAAAATTCCTTCCAAAACTCCACGACCAAATGAACCGCTTGATGCCGATGACGTTGAGAATAAGAATGTTCCCGCAAATTTCAATGATTTTGAAAAGGATAAGGAGGAGGATTGTTTTGCTGTTAAGCAAATGTGGGCAGTGTATGATAACTTCGATTTGATGCCAAGATTTTATGCTATTGTCAAGAAAGTGATTTCCCCTTTCGAGTTGCAGATTTCTTGGTTGGAACCTGATCCAGACGACAAAGACGAGGTTGATTGGCATCATGCACATTTTCCTATTTCCTGCGGTAGGTTCAGACTCGGTCGTTCTCAGAAAATTTCATGTCGTACTACTTTCTCTCATCACGTGCAGTGCGTCAAAGAAACTGGCAAACGTTCTTACCTGGTATTCCCTAATAAAGGAGAAACTTGGGCAATTTTTAGAGTTTGGGATATCAAATGGAGTTCTAATCCAAAAAAACGTTCTGAGTATGACTATGAATGTGTGGAAATCCTTTCAGATTTTTCTAAAGATGTTGGCATCGCAGTTGCATATCTGCGCAAAGTGAAAGGATTTCTTAGCCTCTTACAGAAAACTGGGAAGAATGGAATGGACATATTTTATGTCGGGCCTAATGAGCTATATAGGTTCTCGCATCAAATTCCTTCGTAG 1467 0.4076 MECNKDEAGRARQKWPKLECKEIEKLADEAVIKKQYRRLALLLHPDNNKFAGAEAAFKLIGQANGVLSDRAKRSSFDKKFGISARGAAPKATAKKHQKSSETHHNSDGNVFTAKYDENATNYQNKSFSNSDCFNNQVGLMTFWTSCEHCNSNGCLTVNVYFRKRTAMFARSNTAMKKCAAGVDAHCEAEKSKNGCVPVFKGMESQSYKNVGSKRVRQSAPDSGEIFKARTGDEMRDANDRENVLDPSRVNARRSTRKKHVSYVETFEGDDLKIPSKTPRPNEPLDADDVENKNVPANFNDFEKDKEEDCFAVKQMWAVYDNFDLMPRFYAIVKKVISPFELQISWLEPDPDDKDEVDWHHAHFPISCGRFRLGRSQKISCRTTFSHHVQCVKETGKRSYLVFPNKGETWAIFRVWDIKWSSNPKKRSEYDYECVEILSDFSKDVGIAVAYLRKVKGFLSLLQKTGKNGMDIFYVGPNELYRFSHQIPS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00176 488 PRINTS DnaJ domain signature 36 51 IPR001623 -
Spst10g00176 488 PRINTS DnaJ domain signature 18 36 IPR001623 -
Spst10g00176 488 PRINTS DnaJ domain signature 52 72 IPR001623 -
Spst10g00176 488 Pfam DnaJ domain 22 77 IPR001623 -
Spst10g00176 488 Gene3D DnaJ domain 22 138 IPR036869 -
Spst10g00176 488 MobiDBLite consensus disorder prediction 271 293 - -
Spst10g00176 488 CDD DnaJ 22 69 IPR001623 -
Spst10g00176 488 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 19 283 - -
Spst10g00176 488 MobiDBLite consensus disorder prediction 271 289 - -
Spst10g00176 488 ProSiteProfiles dnaJ domain profile. 13 80 IPR001623 -
Spst10g00176 488 SMART dnaj_3 22 72 IPR001623 -
Spst10g00176 488 SUPERFAMILY Chaperone J-domain 23 79 IPR036869 -
Spst10g00176 488 MobiDBLite consensus disorder prediction 87 110 - -
Spst10g00176 488 Pfam Domain of unknown function (DUF3444) 296 488 IPR024593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00176 Spst-Chr10 1668907 1670755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00176 24 151 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.594 1.46e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00176 - - gmx:102662460 569.311