Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00162 ATGGCCCCGGCGCAACCCAAGGCTAAGAAGACGGCGGCCACCAAGAAGCCCCTCTCTCACCCTCCCTTTGCCGTGATGATTACTGAGGCTATTGCGAGTCTGAAGGAGAGAACTGGTTCCAGCCAATATGCGATAACCAAATTTATAGAAGGAAAACACAAAGAATTGCCTCCAACCTACAAGAAACTTGTCCTCCTTCATCTCAAGAAATCTGTTGCTGCTGGCAAGCTTGTGAAGGTTAAAAACTCCTTCAAGCTTGCACCCACTAAACCTGCCCCGGTTAAAGCCGCTACTGCTGCTCCTAAAAAGCCCAAGGCTGTCGCCAAGCCTGCTGCCAAGGCTGCTACCAAGCCCAAGCCTAAGCCTGCTCCTAAGAAGAAGGCTGTGGCTCCCAAGGCTAAGTCTGTCCCAGCAACTGCTAAGCCCATGGCTAAGCCTGCCAAGCCAGCTGCTAAGAAGGTTGTTGCCAAACCTGCCAAGAAGACTCCCGTGAAGAAGCCTAAGACTGTTGTTAAGAAACCCAAGAGTGTGAAATCGCCAGTGAAGAAGGCTAAGAAGTGA 561 0.5116 MAPAQPKAKKTAATKKPLSHPPFAVMITEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLLHLKKSVAAGKLVKVKNSFKLAPTKPAPVKAATAAPKKPKAVAKPAAKAATKPKPKPAPKKKAVAPKAKSVPATAKPMAKPAKPAAKKVVAKPAKKTPVKKPKTVVKKPKSVKSPVKKAKK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00162 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 19 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst10g00162 186 Pfam linker histone H1 and H5 family 20 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst10g00162 186 CDD H15 19 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst10g00162 186 SMART h15plus2 17 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst10g00162 186 MobiDBLite consensus disorder prediction 154 186 - -
Spst10g00162 186 Gene3D - 15 92 IPR036388 -
Spst10g00162 186 PANTHER HISTONE H1 4 168 - -
Spst10g00162 186 MobiDBLite consensus disorder prediction 90 186 - -
Spst10g00162 186 PRINTS Histone H5 signature 165 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Spst10g00162 186 PRINTS Histone H5 signature 113 127 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Spst10g00162 186 PRINTS Histone H5 signature 6 27 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Spst10g00162 186 PRINTS Histone H5 signature 33 50 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Spst10g00162 186 PRINTS Histone H5 signature 143 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Spst10g00162 186 SUPERFAMILY "Winged helix" DNA-binding domain 16 97 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00162 Spst-Chr10 1568033 1568687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00162 26 135 Single Myb Histone (SMH) Gene Family AT1G49950 30.000 6.66e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00162 K11275 - gmx:100810590 140.584