Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00157 ATGGTGTCGAGCCAGGTGGTGAAAGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAACTTCTACAGAGATGCCACTACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGACAAACTCTCGGATGAGGAGATGGATTGCTGTCCTGTGTGCAACATTGATCTAGGCTGCCTTCCGGTGGAAAAGCTCAGGCCAGACCATAATTTGCAAGATATTAGGGCAAAGATATTCCCGTTTAAAAGAAAAAAAATCAAGGCGCAAGATGTTTTGTCTTCAATATCATTGCCTGCTAAAAGGAAGGAGAGATCACTTTCATCATTGGTAGTAAGTGCTCCCAAAGTTCCAATGCAACCTGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAGGCTGCTGCTTTACGTGGAAGCAGTTTTCTTCTTGAAGAATCCATAAAGAAGGAAGAAACAAATGGTGAAGATAATACGGATTCTTCCATGGCTGAGCCTTCTAAAAAGCACAAGTCTAATGATGACAAAGAGAACAGTGTGGAACATGCAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAATCCTCCAGGTCAAATTTACAAGCAACTCCCCTTGCCAAATTAGAGTCCCCAACTACTCCTCATGGTGGACAAAATATACCTGAAATTTCAACCAAAAGAGACCTACCAGCTTCTGTCCAGAGTGAATTAAACATTTCAAAATCCAAAAATAAGGATACTGGGCATAAAACAATATTTGGGGATGACAAGGATGCAAACAGCTTGCCTTCTGGACCAGTGAAGCGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTGCCTCATCCCCAGCCCCACTAAATGCAACAGGGGGCAAGTGCAACAGAAAAAACAGTCCAATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCATTGCCGCAGATCTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCCGTCTCATTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTTCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTCCCATCATTGCAACTGCATAATCTTGTAGATCTATGGTTCCGGACAGCATCAACCTCGAAAAGGATACCAGCATCAGTGGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCGTATTGTCGAAAGGCCTTGCCCCCTTGA 1299 0.438 MVSSQVVKVKRDTLRPCMTCPLCHNFYRDATTISLCLHTFCRKCIYDKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRKKIKAQDVLSSISLPAKRKERSLSSLVVSAPKVPMQPGFTGKRTKTSTRKAAALRGSSFLLEESIKKEETNGEDNTDSSMAEPSKKHKSNDDKENSVEHAEGKVDLWTPLNCLVEAANRTKSSRSNLQATPLAKLESPTTPHGGQNIPEISTKRDLPASVQSELNISKSKNKDTGHKTIFGDDKDANSLPSGPVKRRRLRPAGQKRVAASEMSASSPAPLNATGGKCNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLSSEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKRIPASVGSSAKDFVMVLSYCRKALPP 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00157 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Spst10g00157 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Spst10g00157 432 MobiDBLite consensus disorder prediction 209 237 - -
Spst10g00157 432 MobiDBLite consensus disorder prediction 299 315 - -
Spst10g00157 432 MobiDBLite consensus disorder prediction 152 192 - -
Spst10g00157 432 CDD RING-HC_PCGF 18 61 - -
Spst10g00157 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 430 IPR044807 GO:0004842
Spst10g00157 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Spst10g00157 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Spst10g00157 432 Gene3D - 310 407 - -
Spst10g00157 432 MobiDBLite consensus disorder prediction 209 315 - -
Spst10g00157 432 SMART ring_2 20 60 IPR001841 -
Spst10g00157 432 SUPERFAMILY RING/U-box 14 85 - -
Spst10g00157 432 MobiDBLite consensus disorder prediction 152 191 - -
Spst10g00157 432 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00157 Spst-Chr10 1535279 1539809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00157 1 351 C3H Transcription Factor Family AT2G30580 43.089 1.25e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00157 K16277 - gmx:100783999 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00157 10 1535279 1539809 Spst10g00157 10 1535279 1539809 ECH