Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00154 ATGATTAACTTTGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGTGGCTCTGCGAGTGATCATGGCGAGTTAACACTGAAGGGCAGTGGTGGAAAGAGAGTCTTTTCTGAAACTGCTTCTGTTGATTTGAAGCTCAATCTTTCTTCCAATAACGACTCTGCCTCGGTTTCAACCACTACAGAGAAGTCCAAAGAGAAGACTACTACAGTTGAACCTACTGCTCGGGCTAACGACCCAGCAAAACCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGATCTTTCAGGAAGAACATAGTGAATGTTCAAAGGAGCAACAATGAAGAGGGTGAGAAGAGTGGTGGTGGAGTAGCATTTGTGAAGGTGAGCATGGATGGGGCACCGTATCTGAGGAAGGTGGACATAAAGTTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCAAAGATGTTCAGTTCCTTCACAATTGGGAAGTGTGGGTCCCAAGGGATGAAGGACTTCATGAATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTCCCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTTCCCTGGGAGATGTTCGTTGAATCATGCAAGCGCCTCCGCATAATGAAAGGTTCTGAGGCAATTGGCCTTGCGCCAAGAGCCGTGGAGAAATGCAAGAACAGAAGCTGA 714 0.4832 MINFEETELRLGLPGGSASDHGELTLKGSGGKRVFSETASVDLKLNLSSNNDSASVSTTTEKSKEKTTTVEPTARANDPAKPPAKAQVVGWPPVRSFRKNIVNVQRSNNEEGEKSGGGVAFVKVSMDGAPYLRKVDIKLYKSYQELSDALAKMFSSFTIGKCGSQGMKDFMNETKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00154 237 MobiDBLite consensus disorder prediction 11 31 - -
Spst10g00154 237 MobiDBLite consensus disorder prediction 48 87 - -
Spst10g00154 237 SUPERFAMILY CAD & PB1 domains 118 218 - -
Spst10g00154 237 Pfam AUX/IAA family 6 228 IPR033389 -
Spst10g00154 237 Gene3D - 114 231 - -
Spst10g00154 237 MobiDBLite consensus disorder prediction 48 63 - -
Spst10g00154 237 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 224 IPR003311 GO:0005634|GO:0006355
Spst10g00154 237 ProSiteProfiles PB1 domain profile. 119 219 IPR000270 GO:0005515
Spst10g00154 237 FunFam Auxin-responsive protein 114 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00154 Spst-Chr10 1516482 1518573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00154 111 222 B3 DNA Binding Superfamily AT3G61830 32.143 2.02e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst10g00154 AUX_IAA 7.5e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00154 K14484 - gmx:100781847 375.941