Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00153 ATGAAGGCATTGCAGGAATTAGTTCCAAGCATTAACAAGACGGACAGAGCAGCGATGCTTGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCACAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAGGGGGAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTGGGAGCAGCAATGCAATTTCTTCAGTCGAAGGCACTTTGTATCATGCCCATATCTCTAGCCTCGGCTATTTTTCGTATGCCCCAATCAGAATCATCAACAGTCATCAAGCCTGAATCAAACAGTCACTGA 414 0.4734 MKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTVIKPESNSH 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00153 137 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 30 IPR011598 GO:0046983
Spst10g00153 137 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 40 IPR036638 GO:0046983
Spst10g00153 137 CDD bHLH_AtbHLH_like 1 38 IPR045239 -
Spst10g00153 137 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 116 - -
Spst10g00153 137 Gene3D - 1 42 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00153 Spst-Chr10 1509071 1510599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00153 4 135 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 74.436 9.53e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00153 - - vun:114189791 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00153 10 1509071 1510599 Spst10g00153 10 1509071 1510599 ECH