Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00143 ATGGCGAAAGAGCTTCTTCTGCAACTTCGTCTACTGCTTCTTCTTCCCGAACAACGGTGGGTGGGAATTCTCTTAATTGATGACATGGAGCAATATGAAATACTTGAACAAATTGGAAAAGGTGCTTTTGGTTCTGCGCTTCTTGTGAGACACAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGGCTTGCTCGTCAAACCGAGCGGTCTCGCAGATCTGCACACCTGGAGATGGAGCTCATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATCATTATAGGTTATTGTGAGGGAGGAGATATGGCAGAAGCTATTAAGAAAGCTAATGGTGTCCTATTTCCAGAGGAGAAACTTTGTAAGTGGCTCGTACAACTTCTTATGGCTCTTGAGTACTTGCACATGAACCACATTCTTCACCGGGATGTCAAGTGTTCAAATATCTTCTTGACAAAAGATCATGACATTCGTCTAGGTGATTTTGGACTTGCCAAGATGTTGACTTCTGATGATCTTGCGTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTCGCGGATATACCTTATGGTTCTAAGTCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACAGCGCATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAGTCAATAGTGGCTCCACTGCCTACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTACTGAGCTGCTTGGACATCCACATCTTCAACCTTATGTTCTTAAGGTCCATCTTAAAATGAATAGCCCCAGGCGAAGCACATTGCCAGTTCATTGGCCAGAATCCAACTACTTGAAGAAAACTAGATTTTTGGTGCCAGAAGATGACCCCGTTTCCGTTTATAGGGATAAGCGACATTCTTTTAGTAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCGACTCTAGAAATAGATTGTACTCCTGACCATTTGAATCAAAGGTTAGCAGAACTACGAATTGGAGATAGCAATGAAGTGAAATCAATCCGGAAGCCTGCTGTTTCCAGAACTTCTAGCAATGTTAAGACTCCAAGGTTCCCTTCCTCAAAAGTCTCTGCCACCAACAAGAAATCAGTAAAATCCTCAAACAATCATACGGTGATACCTCTTTCTCACAATACCACAAAATCTGCTAATACTAATCGTAGGGCATCATTTCCATTGCCAACAAGGGGTGGTATTCGGCAGCCTCCTTGTGGGCCCAATGCCAGTTTGCTTAGTCACGTGTCTTCACCAGATATCTCAGTCAATTCTCCACGAATTGATAAGATGGCTGAATTCCCATTAACTTCATATGTAGATTCTTTGTTCCCCATCAATAGAACATCATCCTTTGCTCAAGGTTCCTCAGGCCTCCCATCCAGCGGCAACCATTCCACCGTGATAGACAAATGCACGGTGGAGGTACATGATAGAGCGTCAAACAGGCCTGATTGTACGGATTCTTGGCAGGGAATCAAGCAGAACGTGTTAAAGGAAATTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACAGCAGGTGCTTCGAGCCACACCTCTTCTGACTTGCGCCGGCGACAATTTGACCCGTCCTCATTCCAACAAAGGGCTGAAGCTTTAGAAGGGTTGCTTGAATTTAGTGCAAGGTTGCTACAGCAGGCAAGGTATGATGAACTTGGCGTTCTGTTGAAACCATTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACAGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAATACTTTCAACCCAGAAGAATCCTTGTAA 1947 0.4309 MAKELLLQLRLLLLLPEQRWVGILLIDDMEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSATELLGHPHLQPYVLKVHLKMNSPRRSTLPVHWPESNYLKKTRFLVPEDDPVSVYRDKRHSFSNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLAELRIGDSNEVKSIRKPAVSRTSSNVKTPRFPSSKVSATNKKSVKSSNNHTVIPLSHNTTKSANTNRRASFPLPTRGGIRQPPCGPNASLLSHVSSPDISVNSPRIDKMAEFPLTSYVDSLFPINRTSSFAQGSSGLPSSGNHSTVIDKCTVEVHDRASNRPDCTDSWQGIKQNVLKEIDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00143 648 CDD STKc_Nek 31 286 - -
Spst10g00143 648 SUPERFAMILY Protein kinase-like (PK-like) 29 334 IPR011009 -
Spst10g00143 648 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Spst10g00143 648 MobiDBLite consensus disorder prediction 388 441 - -
Spst10g00143 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Spst10g00143 648 FunFam Serine/threonine-protein kinase Nek2 29 111 - -
Spst10g00143 648 Pfam Protein kinase domain 32 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00143 648 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 29 598 - -
Spst10g00143 648 FunFam Serine/threonine-protein kinase Nek3 114 360 - -
Spst10g00143 648 ProSiteProfiles Protein kinase domain profile. 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00143 648 MobiDBLite consensus disorder prediction 387 441 - -
Spst10g00143 648 Gene3D Transferase(Phosphotransferase) domain 1 112 302 - -
Spst10g00143 648 MobiDBLite consensus disorder prediction 553 583 - -
Spst10g00143 648 SMART serkin_6 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00143 648 Gene3D Phosphorylase Kinase; domain 1 21 111 - -
Spst10g00143 648 MobiDBLite consensus disorder prediction 559 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00143 Spst-Chr10 1416500 1422894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00143 38 287 MAP Kinase Kinase Kinase AT1G53570 31.765 3.99e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Spst10g00143 Pkinase 4.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00143 K08857 - gmx:100804898 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00143 10 1416500 1422894 Spst10g00143 10 1416500 1422894 ECH
Spst6g00442 6 4133299 4139213 Spst10g00143 10 1416500 1422894 PCT