Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00142 ATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCACTACCTCTTCACTTACCTTTCCCTCTCCATGCTTCTGGAACCCCCAATACCACCTTTCCTTCCAATTTTGATCCCTACAACGCTTCCCATCAATTGCCACTCCAACCTAACAATCTCTTGCACCCGTTACACCACCAACCCTCTACCCACAAAGATGAAGACAAGCAAGAAAACACCACTGTCCCAATGAACTTCGAAATCCAAAGAGATCAAAGGCAACAACTACCCCACCTGATTGATCCCTGGACTAACGACGAAGTGCTCGCGCTCTTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAACTCACCTGGGAACATGTCTCAAGGAAGCTGGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAAAGTAGATATTTTAACAACAACATTAATTACGGCAAGAATAATAATAACAATTATCGGTTTCTTAGTGAGCTTGAACAGCTTTACCATCAAGGAGGTGGTGATCATCATCTTGGGACCGAAGAAAAGACTCGACAACTGCAGAAACAAGACAAGATGGACCACCATGCATTGGAAGAAGGGGATTTCAGAAATGTTGACGCATCGGTGACAAAACAAAACGACGAGGCAGTGGTAGAAAAGACTCAGGAGCGCAAGAGGAGAAGGCCAGGTAGGTTTGAAATGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCTCAGCAAGAAGAGATGCACAACAAGCTCCTCGAAGACATGATGAAGAGAGATGAAGAGAAGTTCACTCGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAGATGAACATGGAGCTTGACATGATGGCACGTGAGCAAGCCATTGCGGGTGATAGACAAGCCAACATCATTCAAATACTGAACAAATTCTCAGCCACTTCCCCTGCAAACAAGAGCCTCAAGGTAATAACTAATGGTTCAAACCTAAAAACTCACACTACACAAAACCCTAATCCTTCACAAAACACTCCAGCTCTACCCACAACAGAAAACCCTACCTCAAGTCTTGGACAAGACACATTACAAGCGATTGTCAATCCTTCTACTTCTTCAAATTCAGCTCAAGTTTCTCAACCCAACCCTTGTTCTTGCTCTCTAAATAACCAGAATAATACGAATCCTGTAAAGAGAAATTCGGTTTTGAATAAAGTTTCGTCACCAACGGTTGTTGAGAGAGACGATGTTGGGAGAAGGTGGCCAAAGGACGAAGTGTTGGCACTGATAAACCTGAGGTGCACTAGTGTGAACAACACCACCACCAACGAGGAGAAGGAAGGGAACAAGGTGCCTCTGTGGGAGAGAATCTCACAAGGGATGTCCGAGTTAGGATACAAGAGGAGCGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAGTACTTCAGAAAAACCAAAGATGTTAATAAGAAGAGGTCCCTTGACTCAAGGACTTGTCCCTACTTTCATCAATTGAACCGTCTCTACAATGAAGGAAAGCTTGTTCTACAATCTGAGAGGCCAGAAAGCCACTTGAATAATCCAGCAGAGAATCCCGAACAAGTGCAACCAGATCAAACACAAGCGGAGTCTTCTTCGCAGGTGGGGCCTGATAGTTTCAGTGTGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1770 0.4452 MFDGVPDQFHQFITPRTSLPLHLPFPLHASGTPNTTFPSNFDPYNASHQLPLQPNNLLHPLHHQPSTHKDEDKQENTTVPMNFEIQRDQRQQLPHLIDPWTNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNNNNNYRFLSELEQLYHQGGGDHHLGTEEKTRQLQKQDKMDHHALEEGDFRNVDASVTKQNDEAVVEKTQERKRRRPGRFEMFKGFCESIVHKMMAQQEEMHNKLLEDMMKRDEEKFTREEAWKKQEMEKMNMELDMMAREQAIAGDRQANIIQILNKFSATSPANKSLKVITNGSNLKTHTTQNPNPSQNTPALPTTENPTSSLGQDTLQAIVNPSTSSNSAQVSQPNPCSCSLNNQNNTNPVKRNSVLNKVSSPTVVERDDVGRRWPKDEVLALINLRCTSVNNTTTNEEKEGNKVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLNRLYNEGKLVLQSERPESHLNNPAENPEQVQPDQTQAESSSQVGPDSFSVQQQVDHGGEKTLMQVPSLDFDQF 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00142 589 Coils Coil 258 278 - -
Spst10g00142 589 Pfam Myb/SANT-like DNA-binding domain 428 519 IPR044822 -
Spst10g00142 589 Pfam Myb/SANT-like DNA-binding domain 98 177 IPR044822 -
Spst10g00142 589 PANTHER FI21293P1 66 574 - -
Spst10g00142 589 MobiDBLite consensus disorder prediction 339 367 - -
Spst10g00142 589 MobiDBLite consensus disorder prediction 534 574 - -
Spst10g00142 589 MobiDBLite consensus disorder prediction 534 589 - -
Spst10g00142 589 MobiDBLite consensus disorder prediction 379 409 - -
Spst10g00142 589 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Spst10g00142 589 Gene3D - 430 495 - -
Spst10g00142 589 Gene3D - 100 156 - -
Spst10g00142 589 SMART sant 426 492 IPR001005 -
Spst10g00142 589 SMART sant 96 153 IPR001005 -
Spst10g00142 589 FunFam Trihelix transcription factor GTL2 430 495 - -
Spst10g00142 589 ProSiteProfiles Myb-like domain profile. 429 490 IPR001005 -
Spst10g00142 589 MobiDBLite consensus disorder prediction 56 75 - -
Spst10g00142 589 CDD GT1 428 497 - -
Spst10g00142 589 FunFam Trihelix transcription factor GT-2 100 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00142 Spst-Chr10 1397774 1399962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00142 1 522 Trihelix Transcription Factor Family AT5G28300 40.204 4.17e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst10g00142 Myb_DNA-bind_4 8.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00142 - - gmx:100804367 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00142 10 1397774 1399962 Spst10g00142 10 1397774 1399962 ECH
Spst6g00441 6 4124046 4126254 Spst10g00142 10 1397774 1399962 PCT