Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00131 ATGCTCCTTCCCCTCCGTTGGTGTCGTCGAGCCGAGAGTATCAGTTGCCCCGATTGCCGGCGCTCAACAAAAATGGCGGACAAGGCAGTGACCATCCGAACCAGAAAATTCATGACAAACAGGCTGCTCTCCAGAAAACAATTTGTTGTTGATGTCCTTCACCCTGGGAGGGCTAATGTTTCCAAGGCTGAGTTGAAGGAGAAATTGGCAAGAATGTATGAGGTGAAGGACCCTAACACTGTATTTGTCTTCAAGTTCCGAACTCACTTTGGTGGTGGCAAGTCCACTGGATTTGGTTTGATCTATGATTCAGTTGACAATGCGAAGAAGTATGAGCCCAAATACAGGCTTATCAGGAATGGACTTGATACTAAGGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGTGTAAAGAAGACCAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGA 486 0.4568 MLLPLRWCRRAESISCPDCRRSTKMADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVDNAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00131 161 MobiDBLite consensus disorder prediction 126 161 - -
Spst10g00131 161 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 30 132 IPR012678 GO:0003735|GO:0005840|GO:0006412
Spst10g00131 161 PANTHER 40S RIBOSOMAL PROTEIN S24 25 155 IPR001976 GO:0003735|GO:0005840|GO:0006412
Spst10g00131 161 Hamap 30S ribosomal protein S24e [rps24e]. 28 130 IPR001976 GO:0003735|GO:0005840|GO:0006412
Spst10g00131 161 Gene3D - 22 156 - -
Spst10g00131 161 ProSitePatterns Ribosomal protein S24e signature. 90 112 IPR018098 -
Spst10g00131 161 Pfam Ribosomal protein S24e 49 127 IPR001976 GO:0003735|GO:0005840|GO:0006412
Spst10g00131 161 FunFam 40S ribosomal protein S24 25 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00131 Spst-Chr10 1319366 1320825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00131 25 156 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.121 3.36e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00131 K02974 - gmx:100802918 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00131 10 1319366 1320825 Spst10g00131 10 1319366 1320825 ECH
Spst6g00431 6 4054633 4055982 Spst10g00131 10 1319366 1320825 PCT