Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00127 ATGCTTTCCCAGTTGGTTTCTTGGATCGTCTCCCCCTCCCCATCCTCTTCCTCTTCCGAAGAACAAAACCATGACATTAACACTGATGATCACATTAATTATGAAAACCACCAAGACATAAATATACAAGATGACGAGAACGAACAATATCTTAGCTCATGCGATGTGGATGACACCATTCCCGTTGCTCTTGCCGTTCGAAATGCCTCCCCTGCCGTGACGGTGGCCTTCCCGCCCAACGATGAAAGAAGCATCATCCCCGACACCGCCCCCACATTAGTAACAGGCTCCAAAGGGCAGCGCTCCACCAAGTATACCGGCATGATGAGACAATATCAGAGGCTGTGGACGAAGCAGGATGAGACGGAACTGCTGAAGGGATACCTTGATTACATCAAGAAGCATGGAAAGAGAACCACCACCCTCCAAAACGACGTAGCCTCGTTGTATGACCACGTGAGGCCCAAACTGAACGTGGATTTCAACAGGAATCAGCTTGTTGAGAAGCTGCGTAGGCTAAAGAGGAAACACAAGTTGGCTTTGGACAAAGGCAAGGACAAGGAGGCTCCCTTTAGGAACCCCCAGGATCAGGCTATTTTCGAAATTTCCCACAAGATTTGGGGCAATGGCACGGATAACCTATTAGACCAAGATTCTTTGGATGGTGATGAATCAGGACGCACTCCTGAAAGTCGTTACCTTGTTGGCAACATTAAGATGAAGATTGATCAACTTGACAACAGTGATGAAATAGACGAGAGAGTGCCAAAGCGATTGCGGCTAGATGATGCAGAAGATGTGAACAGAACAAATGAGCAGAACAATGTTGCTAGTAGCATCCAGGGCTTCATCGAGGAGACCATGAGGTCCTGTTTCTCCCCATTGCCGAAGGAAGTGTTGGATGAAGGACAGGATGAGCCACTTCCTGGGTTAGTGCCAATCCCATTGCCGCTATGCCCTGAGGGAGTGGACCATCAGCAATGGAAAAAACGGGGGATTGTGGAGCTGGAGGTGTATTTGAAGCGGTTGCAATTGTTGCACGATCATATCAAGGCTAGATTGGAGGAATTGCGATCTAGATGA 1083 0.482 MLSQLVSWIVSPSPSSSSSEEQNHDINTDDHINYENHQDINIQDDENEQYLSSCDVDDTIPVALAVRNASPAVTVAFPPNDERSIIPDTAPTLVTGSKGQRSTKYTGMMRQYQRLWTKQDETELLKGYLDYIKKHGKRTTTLQNDVASLYDHVRPKLNVDFNRNQLVEKLRRLKRKHKLALDKGKDKEAPFRNPQDQAIFEISHKIWGNGTDNLLDQDSLDGDESGRTPESRYLVGNIKMKIDQLDNSDEIDERVPKRLRLDDAEDVNRTNEQNNVASSIQGFIEETMRSCFSPLPKEVLDEGQDEPLPGLVPIPLPLCPEGVDHQQWKKRGIVELEVYLKRLQLLHDHIKARLEELRSR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00127 360 PANTHER BNAANNG10740D PROTEIN-RELATED 12 356 IPR007592 GO:0006355
Spst10g00127 360 MobiDBLite consensus disorder prediction 1 31 - -
Spst10g00127 360 Pfam Protein of unknown function, DUF573 113 208 IPR007592 GO:0006355
Spst10g00127 360 Coils Coil 163 183 - -
Spst10g00127 360 Coils Coil 340 360 - -
Spst10g00127 360 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00127 Spst-Chr10 1269938 1271020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00127 60 359 GeBP Transcription Factor Family AT5G28040 31.667 1.22e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Spst10g00127 DUF573 5.7e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00127 - - var:108344158 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00430 6 4050156 4051409 Spst10g00127 10 1269938 1271020 PCT