Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00126 ATGCCCATGGCATCCGATCTAAACGACGCGGTTTTCCCCGAAGAAGATCTCGACGACGACGACGAAACACTAGAGGACGAAGAGGAGGATGACGAAGACGACGACGTTCAAGACGATGACGAAACCGAACCCCCACCCTCCGTCCTCACCGCCGTAACCGTCGCCGCCCCCGGTTCTACCGTCTCCCAAACACTCGACACCGCGTCAATTCCGATCGCCGTCGTCGATTCCTCGCCGAAACGGCCGCGCACCGAGCAAATCGAGGAGAAAAAAGCGCTGGACGATTCGAGGCGACTGTTCCAGCGTCTGTGGACTGACGAGGACGAGATTGGGCTCTTGCAGGGGTTTCTAGACTACACGGCGCAGCGAGGATCCTCTCACCATAACGATACCGCTTTGTTCTATGACCAGATCAAATCGAAGCTTCAACTCGGGTTCAACAAGAACCAGCTCGTCGAGAAGCTCCGGAGGCTGAAGAAGAAGTACCGCAACGTCGTTAGCAAAATCAGCGTTGGCAAGGAATTCTCCTTCAAGAGCCCTCACGACAGAGCCACCTTCGAAATCTCGCAGAGGATCTGGAGCAACACCGCTCCAATCACCGGTCCCGTCGAAGATGACGACGAAATCAACCCTAACCCTAATCCTTATCCTAATCCCAACCCTAATTTCAGCCATTCGGCGAAGACCCCACTGTCGCGGAAGCGATCGCGGCCTCGATCGGAGAAGCGCGAGTTCAACGAAGGTTCAGCGTTGAACAAGGATACTAATTGTATTGGCAACAGTAACAACAACAGCAATAAAGATAATGAAAATTGTAACAATAGGCATAGTATACAGGTTTTGATTGAAGATACGGTGAGGAGTTGCGTATCGCCAGTGTTGAAGGAGTTGGTGAGTGGTAGCATAGGATTGGGAAATGGTTTTGGTTTTGGGGGAAGAGGGTTTGGAGTTGGAGGGTTTTCATTGAATCCCTTGCAAATGCAAATGCAAATGCAAATGGCATTGAGTTCATTGAATTTGGGGATTGGGGAAATGGTGATGGATGAAAAGTGGAGGAAGCAACAGATTTTGGAGCTGGAAGTATATTCCAAGCGTTTGGAATTGGTGCAGAATGAGATCAAGGTTGCTCTTGAGGAGTTGCGATCATCTGGTGGAGGCTGA 1161 0.5082 MPMASDLNDAVFPEEDLDDDDETLEDEEEDDEDDDVQDDDETEPPPSVLTAVTVAAPGSTVSQTLDTASIPIAVVDSSPKRPRTEQIEEKKALDDSRRLFQRLWTDEDEIGLLQGFLDYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVVSKISVGKEFSFKSPHDRATFEISQRIWSNTAPITGPVEDDDEINPNPNPYPNPNPNFSHSAKTPLSRKRSRPRSEKREFNEGSALNKDTNCIGNSNNNSNKDNENCNNRHSIQVLIEDTVRSCVSPVLKELVSGSIGLGNGFGFGGRGFGVGGFSLNPLQMQMQMQMALSSLNLGIGEMVMDEKWRKQQILELEVYSKRLELVQNEIKVALEELRSSGGG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00126 386 Coils Coil 352 379 - -
Spst10g00126 386 PANTHER BNAANNG10740D PROTEIN-RELATED 14 379 IPR007592 GO:0006355
Spst10g00126 386 MobiDBLite consensus disorder prediction 197 272 - -
Spst10g00126 386 Pfam Protein of unknown function, DUF573 100 194 IPR007592 GO:0006355
Spst10g00126 386 MobiDBLite consensus disorder prediction 11 42 - -
Spst10g00126 386 MobiDBLite consensus disorder prediction 1 50 - -
Spst10g00126 386 Coils Coil 148 168 - -
Spst10g00126 386 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00126 Spst-Chr10 1267281 1268441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00126 3 386 GeBP Transcription Factor Family AT5G28040 42.727 4.99e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Spst10g00126 DUF573 6.9e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00126 - - gsj:114372132 459.914