LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst10g00112	ATGGGGTGTGTGATTAGCAGAGAAGTGTCATCGGGAATAATCTCTGAGGCGAAGGAGGAGAAGAGTGTGAGCGTTGAGTCCAGCAAGAAAGTTGATGAAGTGTCCACAAGCAGAGCTGAGGGAAACGTTGTAGAGGCTCAGAACGGTGAGAAGGAGAAGGAGAAGGAAGAGAATGGTGGTGCTGATGGGGCTCGGCGGCCGAAGGGTGAGAGAAGAAGATCAAAGCCAAATCCAAGGCTAAGTAATCCACCGAAACATGTGCAGGGGGAGCAAGTAGCTGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGGGAAGCCCTTAGTGGGTGGATTCCACGAAAGGCTGATACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGCGTAAAATTCATGGCCAGAGAGATTCTTATATTGCGAAGATTGCATCACCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATTAAATTTACAGAGCCTCAGGTTAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGAAACGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAGTACTTAAAATTGCCGACTTCGGCCTTGCATCTTTCTTTGATCCAAATCGCAGGCATCCCATGACTAATCGTGTAGTTACCCTTTGGTACCGCCCTCTTGAGTTGCTTCTTGGTGCCACAGAATACGGTGCGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGGGAGTTATTGGCTGGGAAACCTATTTTGCCTGGACGTACGGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCGAAGATGCCTAATGCTACCTTGTTTAAACCTCGAGAGCCATACAAGAGATGCATAAGAGAGACATTTAAAGATTTTCCACCATCAGCTCTGCCCCTTATCGAGACTCTTCTTGCAATTGATCCAGCAGAACGAAAGAGTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAACGAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGAAGATCAAGAGCTGCAGGAAAAGCTCATGCTGATGGTGCAAAGAAACATCGAATGCGTGATCGCAGTGTAAAAGCTGCTCCTGCTCCAGAAGGCAATGCTGAGCTTCAATCCAACGTTGATAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCGCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCTAATCACATTGATCCAGATATTGTTCCTTCTGACATCTCTTTGGGCTCAACCTCATACACCTTTTCAAAGGAATCATTCCAAGCTTGGTCAGGTCCCATTGGTAATTCTGCTAGCATTAGTAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCATATAAAGGAACCCTCAAGGATAAAGTTAAAGGAAAGAAAATCATAGCCTAG	1740	0.4425	MGCVISREVSSGIISEAKEEKSVSVESSKKVDEVSTSRAEGNVVEAQNGEKEKEKEENGGADGARRPKGERRRSKPNPRLSNPPKHVQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLHHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRNVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPNRRHPMTNRVVTLWYRPLELLLGATEYGAAIDLWSVGCILGELLAGKPILPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPREPYKRCIRETFKDFPPSALPLIETLLAIDPAERKSASDALRSEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDEARRSRAAGKAHADGAKKHRMRDRSVKAAPAPEGNAELQSNVDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPSDISLGSTSYTFSKESFQAWSGPIGNSASISKRKKHTAGDALDLSKPYKGTLKDKVKGKKIIA	579

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst10g00112	579	FunFam	probable serine/threonine-protein kinase At1g54610	106	201	-	-
	Spst10g00112	579	MobiDBLite	consensus disorder prediction	421	458	-	-
	Spst10g00112	579	CDD	STKc_CDK9_like	119	403	-	-
	Spst10g00112	579	ProSiteProfiles	Protein kinase domain profile.	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00112	579	MobiDBLite	consensus disorder prediction	13	36	-	-
	Spst10g00112	579	SUPERFAMILY	Protein kinase-like (PK-like)	114	410	IPR011009	-
	Spst10g00112	579	Pfam	Protein kinase domain	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00112	579	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Spst10g00112	579	ProSitePatterns	Protein kinases ATP-binding region signature.	125	148	IPR017441	GO:0005524
	Spst10g00112	579	MobiDBLite	consensus disorder prediction	539	562	-	-
	Spst10g00112	579	FunFam	probable serine/threonine-protein kinase At1g54610	202	443	-	-
	Spst10g00112	579	Gene3D	Transferase(Phosphotransferase) domain 1	202	443	-	-
	Spst10g00112	579	MobiDBLite	consensus disorder prediction	410	476	-	-
	Spst10g00112	579	MobiDBLite	consensus disorder prediction	1	92	-	-
	Spst10g00112	579	SMART	serkin_6	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00112	579	PANTHER	CELL DIVISION PROTEIN KINASE	117	407	-	-
	Spst10g00112	579	MobiDBLite	consensus disorder prediction	45	77	-	-
	Spst10g00112	579	Gene3D	Phosphorylase Kinase; domain 1	106	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst10g00112	Spst-Chr10	1013776	1018887	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst10g00112	111	441	Core Cell Cycle Gene Families	AT5G10270	54.467	4.14e-124	373

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Spst10g00112		Pkinase	2.2e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst10g00112	K08819		-	gmx:100817289	1038.48