Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00106 ATGGACTGCAACAAGGATGAGGCTTTGAGGGCTTGGAAAATTGCTGAGGCTAGAATGCAAAGAGGTGAATTTTTAGAGGCTCTCAAGTTTGCTTCCAAGGCCAAAAACCTGTATGCTGATGTGGGAAACATTAGCCATGTTCTTACTATTTGTGAGGTTCACAATGCTGCACAGAAACAACTTTCTCCCTCTGACATGGACTGGTATGCGATTCTTCAGATAGAAAGATTGGCGGATGAAACAGCCATAAAGAAACAGTACAAGAGGCTTGCACTCCTACTTCATCCTGATAAGAATAAGTTTGCTGGAGCCGAAGCTGCTTTCAAATTGATTGTGCAAGCCAACGGGGTTTTGAGTGACCAAGCAAAACGTTCTTTGTATGACAAGAAGTTTGCAGTCCCTGTGAGAGGTTCTGTGCCGAAATCCACCCATTCCAAGAAAAAAGTTGGACAGAAGACATTCTGGACATGTTGCCAACATTGTAAAACTAAGCACCAGTATTGCATGCCATTTGGGAATGCAACCATACGCTGTAAGCAATGTTTGAAGACCTTTAAAGCTCGTGCTATTCCTTTGGAAAATACCCAGAAAGAGTCTCCAATGCATGGTCCCCCAAGACCAGAGAGTACTGGTGGAAAATCCCCTGGTGGAGGAGAACATGCTAGTACGTTTGTGAGGCCAAATCCTATGCATATGAAAAAATGTTCTTCTGGCGTGGGTGGTCATTCTGAAGGTGAAGGTGAAAAGTGTAAAGATGGCTATGTTTCTGCATCCACAGGTATGGAGTCACAAACCTCTAAAAATGTTGGAGGTAAAAGAGTTAGGCAGTCAGCACCAGATTTGAGAGAAAGTTTCAAAGCTGATAAATGTGATGAAATGAAAGATGCTTATGTTCGGGAAAATGATCTTGATCCTTCAAGACTTGATACAGGTAGGTATTGTAAACAAAAGCAACATGTTTAA 963 0.4226 MDCNKDEALRAWKIAEARMQRGEFLEALKFASKAKNLYADVGNISHVLTICEVHNAAQKQLSPSDMDWYAILQIERLADETAIKKQYKRLALLLHPDKNKFAGAEAAFKLIVQANGVLSDQAKRSLYDKKFAVPVRGSVPKSTHSKKKVGQKTFWTCCQHCKTKHQYCMPFGNATIRCKQCLKTFKARAIPLENTQKESPMHGPPRPESTGGKSPGGGEHASTFVRPNPMHMKKCSSGVGGHSEGEGEKCKDGYVSASTGMESQTSKNVGGKRVRQSAPDLRESFKADKCDEMKDAYVRENDLDPSRLDTGRYCKQKQHV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00106 320 PANTHER BNAC03G44070D PROTEIN 1 288 - -
Spst10g00106 320 MobiDBLite consensus disorder prediction 301 320 - -
Spst10g00106 320 Gene3D DnaJ domain 49 137 IPR036869 -
Spst10g00106 320 MobiDBLite consensus disorder prediction 192 286 - -
Spst10g00106 320 SUPERFAMILY Chaperone J-domain 62 132 IPR036869 -
Spst10g00106 320 CDD DnaJ 67 120 IPR001623 -
Spst10g00106 320 Pfam DnaJ domain 67 128 IPR001623 -
Spst10g00106 320 PRINTS DnaJ domain signature 103 123 IPR001623 -
Spst10g00106 320 PRINTS DnaJ domain signature 87 102 IPR001623 -
Spst10g00106 320 PRINTS DnaJ domain signature 123 142 IPR001623 -
Spst10g00106 320 PRINTS DnaJ domain signature 69 87 IPR001623 -
Spst10g00106 320 SMART dnaj_3 66 123 IPR001623 -
Spst10g00106 320 MobiDBLite consensus disorder prediction 257 272 - -
Spst10g00106 320 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00106 Spst-Chr10 962901 963863 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00106 4 191 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.995 1.25e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00106 - - pvu:PHAVU_007G183700g 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00106 10 962901 963863 Spst10g00106 10 962901 963863 ECH
Spst6g00395 6 3721188 3724415 Spst10g00106 10 962901 963863 PCT