Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00095 ATGGCCAATCACACCCTAGCAGAGTTTATACGGGAAGAGGAAGAAAGCAAAGCGAATAAATTGAAAAGGGTTTCACTTGCCGAAGCTTTAAATCTTAAACCCAAAGGACTTCTTTCTTCCTCATCTTCTGCCCATGACTTGAGGCATATAGAATTGGAGAAAGAGAAAGAAAACATTGCATCACCAATAGGAGTCTTAGAAGCATGCATGGAAGAATTTCACTCTCATCAAGTAGCTAAACCGAAAACCAGTTGTCCAAGGGCACGTCACTGGACCAATTTTTTCAAACTTCTCAAAAAAAAGTCTTTTAAGCGGCTCGGGTCCCTCCCCCATTTTAGTATTCCAAAGATAGCAAAGTGGAAAAGCAAAAGCAGTAGAGAGAGTCATGTTCTAAGTAAGCTATACAGCTTCAACTCTACTTGGGTCACTTTCAGCCTTTCTGAACTCAGAAATGCAACTAACAATTATAACAGTGAAAATATAATTGGAAGAGGTGGTTTTGCTGATGTTTACAAGGGGTGTCTCCCAGATGGACAATTAATAGCTGTGAAGAAATTGACTAAAGGAAACACAGATGATAATACCGTGGGCTTTCTATCTGAGCTAGGCATAATTGCTCACGTTGACCATCCTAATACTGCCAAGCTAGTTGGATGTTGTGTAGAAAGAGACATGCAACTTGTCTTTGAACTATCTACACTGGGAAGTTTAGGATCCCTTCTTCATGGTTCAGATAAAAACAAATTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCAGATGGTCTCCTCTATCTGCATGAGAGTTGTCACAGGCGAATCATTCATAGAGATATTAAAACAGACAATATTCTGCTCACGGAGAATTTTGAGCCACAGATATGTGACTTTGGGCTTGCAAAATGGTTACCTGAACAATGGACTCACCGTAATATACCACAATTTGAAGGCACATTTGGTTATTTTGCTCCTGAATATTTCATGCACGGAACAGTAGATGAAAAAACTGATGTTTATGCATTTGGGGTCCTACTTTTGGAGATCATAACCGGGCGTCCAGCTGTGGATCATTTGCAGCAAAGTGTTGTGATATGGGCAAAACCTTTCCTTGAAGCCAATCTTACCAAGGACCTTGTTGATCCTTCACTTGGTGATGATTATGATAGAGGACAATTGGGTTGTGTGGTTATTGTCACAATGCTAAGAAGTCACAACAAGTACGGTCGGGACTCAAAAACAAGTAGAAAGATACCTCTCCGAAGAACATACTCAGAAGAGCTATTAGATGCGCAAGAATACAACTCAACAAAATATCTAAGAGATCTCAAGCGACATCAACAAATTGCATTAGGTCTTGAGATCTAA 1371 0.3975 MANHTLAEFIREEEESKANKLKRVSLAEALNLKPKGLLSSSSSAHDLRHIELEKEKENIASPIGVLEACMEEFHSHQVAKPKTSCPRARHWTNFFKLLKKKSFKRLGSLPHFSIPKIAKWKSKSSRESHVLSKLYSFNSTWVTFSLSELRNATNNYNSENIIGRGGFADVYKGCLPDGQLIAVKKLTKGNTDDNTVGFLSELGIIAHVDHPNTAKLVGCCVERDMQLVFELSTLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHESCHRRIIHRDIKTDNILLTENFEPQICDFGLAKWLPEQWTHRNIPQFEGTFGYFAPEYFMHGTVDEKTDVYAFGVLLLEIITGRPAVDHLQQSVVIWAKPFLEANLTKDLVDPSLGDDYDRGQLGCVVIVTMLRSHNKYGRDSKTSRKIPLRRTYSEELLDAQEYNSTKYLRDLKRHQQIALGLEI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00095 456 Gene3D Phosphorylase Kinase; domain 1 116 230 - -
Spst10g00095 456 Pfam Protein tyrosine and serine/threonine kinase 159 365 IPR001245 GO:0004672|GO:0006468
Spst10g00095 456 SMART serkin_6 156 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00095 456 Gene3D Transferase(Phosphotransferase) domain 1 233 418 - -
Spst10g00095 456 PANTHER OS08G0249100 PROTEIN 45 403 IPR046958 -
Spst10g00095 456 ProSiteProfiles Protein kinase domain profile. 156 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00095 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Spst10g00095 456 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 132 231 - -
Spst10g00095 456 SUPERFAMILY Protein kinase-like (PK-like) 144 366 IPR011009 -
Spst10g00095 456 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 233 433 - -
Spst10g00095 456 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00095 Spst-Chr10 857126 860027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00095 120 449 Receptor kinase-like Gene Family AT1G53420 37.791 4.14e-63 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Spst10g00095 PK_Tyr_Ser-Thr 9.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00095 - - gmx:100781529 661.759