Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00088 ATGGCTTTGTTACTGCCACCACTCCATTTTTCAACTTCCTATCTCAGCACAAGCACCATTGTGGCTCTCTGTGTATTCTTCACTCTCCTAGGAGCTTGTGTCATCATTGGCCATCTTCTGGAAGAGAATCGGTGGGCTAATGAATCCATCATTGCCCTCCTTCTGGGGTTGTGTGCTGGAACGGTGGTGTTGTTTGTGACTAACTTTCAAAGTGCCAAGATTTTAATATTCAGTGAAGACTTGTTCTTTCTTTACTTGCTTCCCCCGATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAACAGTTCTTCAAGAATTTCACCACTATACTGCTCTTTGGAGTCATTGGAACAGTTATTTCATTCTGTCTGATATCTGTTGGTGCCCTTATGCTCATTCAGTGGATTGGAATAGCTAACCTTGGCATAAAAGATTACCTTGCCATCGGTGCCATTTTGTCAGCAACGGACTCAGTTTGTACATTGCAGGTTCTCAATCAAGATGAAACACCCTTGCTTTACAGCATTGTATTTGGGGAGGGAGTAGTAAATGATGCCACTTCCATTGTGCTTTTCAATTCGGTCCAATCCCTTGACTTCACCAGCAACAACTCTATGACAGCCTTGAAATTGTTAGGGACCTTCCTTTACCTCTTCTGCACTAGTACTGCCCTTGGCGTAGGAGTTGGCCTTTTAAGTGCTTATATTATTAAAGCACTTTACCTAGGAAGGCATTCTACTGATCGTGAACTTGCACTTATGATGTTGTTGGCATATTTGTCATATATGATTGCCGAGTTATTCACTTTAGAAATTCAAGATATATATACAGACATATGTGTGGCTTCTGCAGCTTTTGAGTCTCAGTGGGATTTTGACTATTTTCTTCTGTGGCATTGTTATGTCACACTACACTTGGCACAATGTTACATTAAGCTCAAGGACAACCACCAAACATTGACAAATGGAAAAGCAGCAAAGGCAGGAACTTCAGTTGCTGTGAGTTCAGCTTTGTTTGCATTAGTGTTGATTGGAAGAGCAGCTTTTGTGCAAGTGCCTGATATAAGGTTTAATTTTGCAGTAGCCAAGAGGACATCAACACAAGACTCTGCATTTATGATCACCTCTACTATAATTGTGGTCTTATTCAGCACTGTGGTATTTGGCTCCATTACAAAGCCTCTGATAGAGGCTGTGCAACTAAGGCATTCAAAACCAACCAGTTTTGATTCCACTGATAACGTAGAAGATTTGAGATTCCTGTTGCTTGAAAACACTGGTCCCCTTAATCAAAACAACAATCGGCCATTTCAAAGGCAAAGTAGAATAGGTACGCTAATGAGTCATCCAAGCAAAACTGTTCACTACTTCTGGAGGAAATTTGATGACAAGTTTATGAGACCTGTGTTTGGTGGAAGGGGTTTTGTGCCATTTGCTCCTGTCGAAGAATGA 1452 0.4125 MALLLPPLHFSTSYLSTSTIVALCVFFTLLGACVIIGHLLEENRWANESIIALLLGLCAGTVVLFVTNFQSAKILIFSEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTILLFGVIGTVISFCLISVGALMLIQWIGIANLGIKDYLAIGAILSATDSVCTLQVLNQDETPLLYSIVFGEGVVNDATSIVLFNSVQSLDFTSNNSMTALKLLGTFLYLFCTSTALGVGVGLLSAYIIKALYLGRHSTDRELALMMLLAYLSYMIAELFTLEIQDIYTDICVASAAFESQWDFDYFLLWHCYVTLHLAQCYIKLKDNHQTLTNGKAAKAGTSVAVSSALFALVLIGRAAFVQVPDIRFNFAVAKRTSTQDSAFMITSTIIVVLFSTVVFGSITKPLIEAVQLRHSKPTSFDSTDNVEDLRFLLLENTGPLNQNNNRPFQRQSRIGTLMSHPSKTVHYFWRKFDDKFMRPVFGGRGFVPFAPVEE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00088 483 PANTHER SODIUM/HYDROGEN EXCHANGER 369 470 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Spst10g00088 483 Pfam Sodium/hydrogen exchanger family 32 270 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Spst10g00088 483 Gene3D - 142 194 - -
Spst10g00088 483 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Spst10g00088 483 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Spst10g00088 483 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Spst10g00088 483 PRINTS Na+/H+ exchanger signature 150 160 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00088 Spst-Chr10 824049 829641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00088 15 480 Antiporters AT5G27150 50.682 4.38e-156 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00088 K14724 - qsu:112009828 554.288