Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00085 ATGGCACTGGAAGCAGTGGTGTTTCCACAATCACAAGACCCGTTTGGTGGTTACGGATCAGTGAAGGACTTCTACAACTGCACCTTCTTGTCTGCTACTTCACCCAACTGGGGGGACTATGAACACATCAACATCGACATCAACAAAGAAGAAGAACAAGGTTCTATCGCCACTTTTCTCGATAATAATAACAACCAACCAGACAATTACTCTTATGGAGGAGATTGGACCAGCTCCTCCTCTTCTATCTTACCCCACTTGAATGAGCTTCAAGAAACCACTGACCCCAGTAACAGCACTCAAAACTTGGATACCTTAACCACTCGTCCTAAGAGGCGCAGAGCTAAAAGCAGAAAGAACAAGGAAGAAATCGAGAACCAAAGAATGACTCACATTGCTGTGGAGCGCAATAGAAGAAAACAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCGGACTCTTATATTCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAGGAGCTTGAGCAGAGGCTGCATTTTCTTGGTGCTCAGAAAGAAGGAGAGGCGAAATCTGATGCTGGTGGTGCAACGAACATGCCCTTTTCTGAGTTCTTCGCCTTTCCACAGTATTCAACAAGTGGTGGGGGTGGGGGTGGCGGCGGCTCTGATAATTCTGCAACCATAGGTGAAGACGTGGGTGAGGTTAAGTCTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCATGAAGCGCCCCAAGCAGCTCTTGAGGTTGGTCTCTGGTTTGCATACCATGCGCCTCACAATCTTGCACCTAAATGTTACTACCACTGGGGAAGTTGTTCTCTACTCTCTCAGTGTTAAGGTGGAAGATGATTGCAAGTTGGGATCCGTTGATGATATAGCTGAAGCTGTGTACCAGATGCTGGATAGGATTCAGCAAGAGGCAATGCTGAATTAA 996 0.4578 MALEAVVFPQSQDPFGGYGSVKDFYNCTFLSATSPNWGDYEHINIDINKEEEQGSIATFLDNNNNQPDNYSYGGDWTSSSSSILPHLNELQETTDPSNSTQNLDTLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGEAKSDAGGATNMPFSEFFAFPQYSTSGGGGGGGGSDNSATIGEDVGEVKSGIADIEVTMVESHANLKIRSMKRPKQLLRLVSGLHTMRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAEAVYQMLDRIQQEAMLN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00085 331 PANTHER MAX DIMERIZATION, MAD 79 328 - -
Spst10g00085 331 Pfam Helix-loop-helix DNA-binding domain 127 178 IPR011598 GO:0046983
Spst10g00085 331 MobiDBLite consensus disorder prediction 91 106 - -
Spst10g00085 331 MobiDBLite consensus disorder prediction 91 122 - -
Spst10g00085 331 Gene3D - 111 193 IPR036638 GO:0046983
Spst10g00085 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 177 IPR011598 GO:0046983
Spst10g00085 331 SMART finulus 132 183 IPR011598 GO:0046983
Spst10g00085 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 189 IPR036638 GO:0046983
Spst10g00085 331 CDD bHLH_AtFAMA_like 129 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00085 Spst-Chr10 809188 810402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00085 1 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.875 2.42e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g00085 HLH 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00085 - - pvu:PHAVU_007G181900g 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00085 10 809188 810402 Spst10g00085 10 809188 810402 ECH
Spst6g00366 6 3480552 3484794 Spst10g00085 10 809188 810402 PCT