Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00082 ATGAATAACTCAAAGCGCTGTTACGAGAATGGAGGAATTTACTTTCTTCTCCTCCTCTTCATCTTTCCTCTTGCCGCTGCACAATCTGTTAACGGTAACCAAAACGACTCGTATTACAATCGTTTCAGTCCTTCCATGGCCATCATAATCGTCATCCTCATCGCGGCGGTCTTCCTCATGGGATTCTTCTCCATCTATATCCGCCACTGCGCCGACTCCCCCTCCGCCAGCATCCGCAACCTCGCCGGAGGCACCGCCCGCACGCGCCGAGGCCTCGACCAGGCCGTCATCGACACCTTCCCGACGCTCGAGTACTCCGTCGTCAAGATCCACAAGCTCGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTCTTCCACCCCGACTGCATCGACGAGTGGCTCGCCTCCCACACCACCTGCCCCGTCTGCCGCGCCAACCTCGTCCCCGAGCCCGGAGACTCCGTCAGAGGAGTTCCGATTCTCAACGACATCGAGGCCCAAAGCGAAGACCAACCCGAAGCCCACAACGATGCCGTCGAGCCTGCTCCCGAACCACAACAAGAGTCTAAGCTTCCAATTCCCTCCGAACCCCCTCAAGTGCTCACCCTAAACCAGACGCTGAACCGGAACCGCACGAGAGGCTCCCGGTCGGGCCGCCCCCGCCGGTTCCCGCGCTCTCACTCGACCGGTCATTCGCTGGTCCAACCCGGCGAGGACACTGAACGGTTCACCTTGAGGCTTCCCGAGGAAGTTAGAAAACAATTACTTCTGAACCCTGAACTTCATCGAGCGAGAAGCTTGGTTATGTTACCCAGGGAAGGTAGTTCACGGCGTGGATATCGAACCGGCGAGGGTAGTAGCAGAGGGAGGTCTTCGAGGCGGTTGGACCGGGGGTTTAAGTCGGACCGGTGGGTTTTCACGATGGCGCCGCCTTTCTTAGTGAGGGCCTCGTCGGTTAGGTCCCCGAGGGTGGCCAACAACGGCGGCGCAGGAACATCCGTTCCGCCGCCGCCGGCTGCTGTGGAATCTGTTTGA 1089 0.5923 MNNSKRCYENGGIYFLLLLFIFPLAAAQSVNGNQNDSYYNRFSPSMAIIIVILIAAVFLMGFFSIYIRHCADSPSASIRNLAGGTARTRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPDCIDEWLASHTTCPVCRANLVPEPGDSVRGVPILNDIEAQSEDQPEAHNDAVEPAPEPQQESKLPIPSEPPQVLTLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPEEVRKQLLLNPELHRARSLVMLPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSVRSPRVANNGGAGTSVPPPPAAVESV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00082 362 MobiDBLite consensus disorder prediction 216 231 - -
Spst10g00082 362 MobiDBLite consensus disorder prediction 186 259 - -
Spst10g00082 362 SMART ring_2 120 161 IPR001841 -
Spst10g00082 362 SUPERFAMILY RING/U-box 113 168 - -
Spst10g00082 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 167 IPR013083 -
Spst10g00082 362 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Spst10g00082 362 MobiDBLite consensus disorder prediction 295 313 - -
Spst10g00082 362 PANTHER RING FINGER DOMAIN-CONTAINING 33 172 - -
Spst10g00082 362 CDD RING-H2_EL5-like 119 162 - -
Spst10g00082 362 MobiDBLite consensus disorder prediction 335 362 - -
Spst10g00082 362 Pfam Ring finger domain 119 162 IPR001841 -
Spst10g00082 362 MobiDBLite consensus disorder prediction 290 313 - -
Spst10g00082 362 FunFam E3 ubiquitin-protein ligase ATL6 81 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00082 Spst-Chr10 781076 782164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00082 13 362 Rapid Response to Elicitors AT3G05200 47.500 1.50e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00082 K10664 - gmx:100810865 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00082 10 781076 782164 Spst10g00082 10 781076 782164 ECH
Spst6g00365 6 3467804 3469018 Spst10g00082 10 781076 782164 PCT