Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00078 ATGGATCATCAAGGGCATGGGCATGGTCAGAACCCATCTCTGGGAGTTGTTGGAAGTGGACCTCAACTCACTTATGGTTCTAATCCATACCAAGCCAGTCACATTACAGGCTCACCTGGGATGGTTGTTGCATCACCTGGGAGCATTCAATCCACTGGTCAACCAGCTACAAATCAGCTAGGACAGCATCAACTTGCTTATCAGCACATGCATCAGCAACAGCAGCAGCAGCTGCAGCAAAGACTCCAAGCCTTTTGGGCAAATCAATATCAAGAGATTGAAAAAGTGACTGATTTCAAAAACCACAGCCTTCCCTTGGCAAGAATAAAAAAGATTATGAAGGCCGATGAGGATGTCAGAATGATATCAGCTGAAGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTGGAGTTAACCTTGCGTTCTTGGAATCACACCGAAGAGAATAAAAGGAAAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGATATTGTGCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTGTACCTGTTACAGGGGCTCCTGAGGCACTTCCTTACTGCTATATGCCACCTCAACATGCTCAAGTTGGAGCTGCTGGTGTCATGATGGGTAATAAGCCTGTGATGGACCCTTATGGTCAACAGTCTCATCACTACAACATGGCACCACAAATGTGGCCACAACCACCAGAGCAACAACAATCATCTCCAGACCAGTAG 786 0.4517 MDHQGHGHGQNPSLGVVGSGPQLTYGSNPYQASHITGSPGMVVASPGSIQSTGQPATNQLGQHQLAYQHMHQQQQQQLQQRLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRKTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASMPRGTVPVTGAPEALPYCYMPPQHAQVGAAGVMMGNKPVMDPYGQQSHHYNMAPQMWPQPPEQQQSSPDQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00078 261 MobiDBLite consensus disorder prediction 15 35 - -
Spst10g00078 261 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Spst10g00078 261 MobiDBLite consensus disorder prediction 239 261 - -
Spst10g00078 261 MobiDBLite consensus disorder prediction 43 57 - -
Spst10g00078 261 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Spst10g00078 261 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Spst10g00078 261 MobiDBLite consensus disorder prediction 1 57 - -
Spst10g00078 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 69 221 - -
Spst10g00078 261 MobiDBLite consensus disorder prediction 234 261 - -
Spst10g00078 261 SUPERFAMILY Histone-fold 68 175 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00078 Spst-Chr10 746212 746997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00078 1 227 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.842 1.32e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst10g00078 CBFD_NFYB_HMF 1.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00078 K08066 - gmx:100785287 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00078 10 746212 746997 Spst10g00078 10 746212 746997 ECH
Spst6g00360 6 3442079 3443292 Spst10g00078 10 746212 746997 ECH
Spst6g00360 6 3442079 3443292 Spst10g00078 10 746212 746997 PCT