Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00043 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATATCAGAGAAGATGCAGCAGTTAAGCAATCTGAGATGCTTGGTCAGTTCCATAGTCCACATTCTCATACTTCGACTACAACAACAAATAATAGCAATGGTTCCAACACAAATTCACAACCACCTGTACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTTTATCACCAAACACACTGATGGCCACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCGTGGAAGCTTAAGCAGAGAACAAGCACAGAAGTTCGAAAGAGGGTTTATGTTTGTCCAGAACCTTCGTGTGTCCACCACAACCCTGCAAGAGCACTTGGGGACCTCACAGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTCCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATCTTTTCCAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTGGCTGAAGAGAACAACAAATCCAACGAAGGACAAATACCAAAGATAGGTCCAAACTTGCAATGCCAACAGATTCCAAATCTCGTTTCCTCGTTACCAATCAACACCAACATTGTTCCCAACCCACAAATCGGTGGCACCTCGGAGTTCAATCATGCTGAACACAAGCACCCACCATCACTCCCACACGAGCTCACGCCAATGCCTGCACCAAAACCCTTCAACAACACCACCACCATGGCAGGAACAGTGTTCACGAGAAGCCTCTCATCAACCTCTTCTCCCTCTCTCCAACTAAGTTCAAATATTTTCGAGGAAAACGGGCTCCACCTGGCTGCAGGGTCGCCACACATGTCAGCCACGGCACTGCTGCAAAAAGCTGCGCAAATGGGAGCAACAGTAACAGATAAAACTTTTGCCACAAACATGGCACCGCCATCGTTTGGCGTGCTGCAACAGCAACCGAATGGACAATCCTTCATGAACCAATATATGCACAGTGGCCAACATGATGTCAATGTCAACATCTCCGCTCAGTATAATGGTTTCGGTGTAAATGGGATGGGTGGAGGGAGCGTTGGAATGAATGGTGTGGACATGTTCAACGCTATTTTGGACCAAAGCAAGGCTTTATCAAAGATCATAGAGCAAAACAATAGAAGCAGCAGTGTAGGACCAACAAATGGAGTTTCAAGTGGTTCTATTAACGTTGGTGGAAGTAAAGGAACTGGAGATGTAATGACGTTGGACTTTCTGGGAATAGGAGGTGGTGGTGGTGGTGGTGGAGGTGGTGGGGGTGCACATGGAAACTTCTATGGTGGTGCTCAACAAGCAGAGAATGGTGCACCGGATGAGGTTTGGAGAAACTGGTCTAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1569 0.4608 MSNITSCDSGSFSTENIREDAAVKQSEMLGQFHSPHSHTSTTTTNNSNGSNTNSQPPVPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKSNEGQIPKIGPNLQCQQIPNLVSSLPINTNIVPNPQIGGTSEFNHAEHKHPPSLPHELTPMPAPKPFNNTTTMAGTVFTRSLSSTSSPSLQLSSNIFEENGLHLAAGSPHMSATALLQKAAQMGATVTDKTFATNMAPPSFGVLQQQPNGQSFMNQYMHSGQHDVNVNISAQYNGFGVNGMGGGSVGMNGVDMFNAILDQSKALSKIIEQNNRSSSVGPTNGVSSGSINVGGSKGTGDVMTLDFLGIGGGGGGGGGGGGAHGNFYGGAQQAENGAPDEVWRNWSSKNAGFESFSATSSI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00043 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Spst10g00043 522 MobiDBLite consensus disorder prediction 1 74 - -
Spst10g00043 522 MobiDBLite consensus disorder prediction 30 59 - -
Spst10g00043 522 SMART c2h2final6 166 186 IPR013087 -
Spst10g00043 522 SMART c2h2final6 131 161 IPR013087 -
Spst10g00043 522 SMART c2h2final6 90 112 IPR013087 -
Spst10g00043 522 Gene3D Classic Zinc Finger 145 224 - -
Spst10g00043 522 MobiDBLite consensus disorder prediction 1 19 - -
Spst10g00043 522 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Spst10g00043 522 FunFam protein indeterminate-domain 12-like 69 137 - -
Spst10g00043 522 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Spst10g00043 522 Gene3D Classic Zinc Finger 69 136 - -
Spst10g00043 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 489 IPR031140 -
Spst10g00043 522 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Spst10g00043 522 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00043 Spst-Chr10 451700 455146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00043 50 348 IDZ Gene Family AT3G50700 58.104 1.27e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g00043 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00043 - - gmx:100785295 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00335 6 3260578 3263509 Spst10g00043 10 451700 455146 ECH
Spst10g00043 10 451700 455146 Spst10g00043 10 451700 455146 ECH
Spst1g03161 1 40122076 40125505 Spst10g00043 10 451700 455146 PCT
Spst6g00335 6 3260578 3263509 Spst10g00043 10 451700 455146 PCT