LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst10g00041	ATGGATCACGCGCGATCGACTAACGGCGAGGACAATGCGACGGGAATTCCGGACGACTTGCGGTGCAAGAGGTCAGACGGCAAGCAGTGGCGGTGCACGGCCATGTCGATGCCGGACAAGACGGTGTGCGAGAAACACTACATCCAGGCCAAGAAGCGCGCCGCGAATTCCGCAATGAGGGCCAACCTGAAGAAGGCCAAGAGGAAGTCGCTGTCGCTCAACGAGTCTGATGCTTATTTGGAGAGTAAGAGCGACGATTTTGACGTTCCTCTCTCCGCCATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAACCAGTTTCGTTACACACCCGAGCGTGACGCGCGAAGAGGCTCCTCTGCGAGACAAGCTCATGACGAGGTGGATGTGGATGTGGAAGCGGACGCGGATGCGGATGCGGATGCTGATGCTGACGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCCCCTATGACTCTCCGCCGGACTCCTCGCGCAAGAGATCGCGAAGGAGCTTGGATGCTAATGCCACCACTGAATATTCCGACGGAACCTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAGTGACCGAGATAGAGTTACTTGGTGCTTAAAATGTGATAGGAGGGGATATTGTGATAGCTGTATATCATCATGGTACTCGGACATTTCGTTGGATGAAATTCAGAGGACATGTCCTGCTTGCCGTGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCTATCAAGGTTCGGATACGTGAGATACCTGTTCTGGATAAGTTACAGTATCTCCATGTGTTGCTATCTTCGGTGCTTCCTGTGGTAAAGCAGATCCACCGTGAGCAGTGTTTTGAAGTGGAACTTGAAAAGAAGTTGCGTGATCTTCGAGAAGCAACTGCAGATGGCAACAAAGAACCCCAGACAGAGCTAGCAAAAGCTTCTGATCAAAATATAATAAGTAAATTTCCTCATTGGAGGTCCAATGACAATGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGCTGTGGTCATTGTTCATTAAATTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTTGAGGAAATGGTTAGTGGCTGCAGGATTAGTAACACTGATGGTCCACCAGAAATGGGCCTGAATGATCTCAGTCTCTGCCAATATTCTCGTAGAGAAGCCAGTGATGATAATTTTCTTTATTGTCCAGCATCTGACGATATCAAAACTGATGGGATTGGAAATTTCAGAAAGCATTGGAAAAATGGTGAGCCTGTTATTGTTAAGCATGTATTTGATGGGTCATCCGTTTCAAGTTGGGATCCAATGGTCATATGGAGGGGGATTCTAGAGACAACAGATGAGAAAGCAAAAGATGAAAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTGGAAGGGTGTGTTCATGAAAATGGTTGGCCACAGTTGTTGAAATTGAAAGATTGGCCTTCACCTAGTGCATCTGAAGAGTTTCTATTGTACCAAAGACCTGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATTTATATAGCTTATGGAATTAGTGATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCATTTCAATATTCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGTTGAAGGCCTGGCAGAGAACTAAAATTGAAATTATACAAAACGCTAAAGCTTATGAAGAATCTGAGGCAAAAGAGTCGCATGGGGATCCTCAAATATTTTCAAGGGGGAGTTCACCTGATTCATCACTTGGTACAAAAAGTAGTGGACTGGATGTGGATTCAAACCAGAATAAGTCAACTATGGATCAAGGGTTTGAAATTTATTCTAGTGCTGAAGGTAATATTGTCAATTGTAAGCTCCCATTCACACAAAATGGAGATGTCTCTGCAAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGACGGCAGGATGTTCCAATATTGACTAAATATTTGCAAATACATTGGAAGGAATTTGGGAAGTCAGATGATGTGGGAAATGAATTTGTTGCATGGCCTCTTTATGGTGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTCGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCCAATGTTCAGCTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGGGATGCTGTAAGATTGACAGAAGAAATTCGCTGTCTACCTAATGAACATGAATCAAAGGTTCAAGTATTGGAGGTTGGCAAGATATCTCTTTATGCAGCAAGTTCTGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGCCGAGATTGGATATGGAGACCCCAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA	2673	0.4426	MDHARSTNGEDNATGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLSLNESDAYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDARRGSSARQAHDEVDVDVEADADADADADADADVALYEEDNWVPYDSPPDSSRKRSRRSLDANATTEYSDGTSGSSEDTGGQTCHQCRRSDRDRVTWCLKCDRRGYCDSCISSWYSDISLDEIQRTCPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRDLREATADGNKEPQTELAKASDQNIISKFPHWRSNDNGSIPCPPKEYGGCGHCSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNTDGPPEMGLNDLSLCQYSRREASDDNFLYCPASDDIKTDGIGNFRKHWKNGEPVIVKHVFDGSSVSSWDPMVIWRGILETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYLEGCVHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKAWQRTKIEIIQNAKAYEESEAKESHGDPQIFSRGSSPDSSLGTKSSGLDVDSNQNKSTMDQGFEIYSSAEGNIVNCKLPFTQNGDVSAKTHPGVLWDVFRRQDVPILTKYLQIHWKEFGKSDDVGNEFVAWPLYGGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEIRCLPNEHESKVQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA	890

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst10g00041	890	ProSiteProfiles	WRC domain profile.	16	60	IPR014977	-
	Spst10g00041	890	ProSiteProfiles	Zinc finger RING-type profile.	197	244	IPR001841	-
	Spst10g00041	890	MobiDBLite	consensus disorder prediction	1	20	-	-
	Spst10g00041	890	Pfam	JmjC domain, hydroxylase	757	799	IPR003347	-
	Spst10g00041	890	MobiDBLite	consensus disorder prediction	642	667	-	-
	Spst10g00041	890	ProSiteProfiles	JmjC domain profile.	524	820	IPR003347	-
	Spst10g00041	890	MobiDBLite	consensus disorder prediction	105	128	-	-
	Spst10g00041	890	MobiDBLite	consensus disorder prediction	105	138	-	-
	Spst10g00041	890	MobiDBLite	consensus disorder prediction	631	667	-	-
	Spst10g00041	890	Pfam	Zinc-finger domain of monoamine-oxidase A repressor R1	192	257	IPR018866	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst10g00041	Spst-Chr10	440048	447443	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst10g00041	17	57	GRF Transcription Factor Family	AT3G13960	46.341	1.92e-06	49.3

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Spst10g00041		JmjC	2.3e-06	CL0029

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst10g00041	K15601		-	gmx:100801287	1548.49

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst10g00041	10	440048	447443	Spst10g00041	10	440048	447443	ECH

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