Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00041 ATGGATCACGCGCGATCGACTAACGGCGAGGACAATGCGACGGGAATTCCGGACGACTTGCGGTGCAAGAGGTCAGACGGCAAGCAGTGGCGGTGCACGGCCATGTCGATGCCGGACAAGACGGTGTGCGAGAAACACTACATCCAGGCCAAGAAGCGCGCCGCGAATTCCGCAATGAGGGCCAACCTGAAGAAGGCCAAGAGGAAGTCGCTGTCGCTCAACGAGTCTGATGCTTATTTGGAGAGTAAGAGCGACGATTTTGACGTTCCTCTCTCCGCCATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAACCAGTTTCGTTACACACCCGAGCGTGACGCGCGAAGAGGCTCCTCTGCGAGACAAGCTCATGACGAGGTGGATGTGGATGTGGAAGCGGACGCGGATGCGGATGCGGATGCTGATGCTGACGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCCCCTATGACTCTCCGCCGGACTCCTCGCGCAAGAGATCGCGAAGGAGCTTGGATGCTAATGCCACCACTGAATATTCCGACGGAACCTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAGTGACCGAGATAGAGTTACTTGGTGCTTAAAATGTGATAGGAGGGGATATTGTGATAGCTGTATATCATCATGGTACTCGGACATTTCGTTGGATGAAATTCAGAGGACATGTCCTGCTTGCCGTGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCTATCAAGGTTCGGATACGTGAGATACCTGTTCTGGATAAGTTACAGTATCTCCATGTGTTGCTATCTTCGGTGCTTCCTGTGGTAAAGCAGATCCACCGTGAGCAGTGTTTTGAAGTGGAACTTGAAAAGAAGTTGCGTGATCTTCGAGAAGCAACTGCAGATGGCAACAAAGAACCCCAGACAGAGCTAGCAAAAGCTTCTGATCAAAATATAATAAGTAAATTTCCTCATTGGAGGTCCAATGACAATGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGCTGTGGTCATTGTTCATTAAATTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTTGAGGAAATGGTTAGTGGCTGCAGGATTAGTAACACTGATGGTCCACCAGAAATGGGCCTGAATGATCTCAGTCTCTGCCAATATTCTCGTAGAGAAGCCAGTGATGATAATTTTCTTTATTGTCCAGCATCTGACGATATCAAAACTGATGGGATTGGAAATTTCAGAAAGCATTGGAAAAATGGTGAGCCTGTTATTGTTAAGCATGTATTTGATGGGTCATCCGTTTCAAGTTGGGATCCAATGGTCATATGGAGGGGGATTCTAGAGACAACAGATGAGAAAGCAAAAGATGAAAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTGGAAGGGTGTGTTCATGAAAATGGTTGGCCACAGTTGTTGAAATTGAAAGATTGGCCTTCACCTAGTGCATCTGAAGAGTTTCTATTGTACCAAAGACCTGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATTTATATAGCTTATGGAATTAGTGATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCATTTCAATATTCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGTTGAAGGCCTGGCAGAGAACTAAAATTGAAATTATACAAAACGCTAAAGCTTATGAAGAATCTGAGGCAAAAGAGTCGCATGGGGATCCTCAAATATTTTCAAGGGGGAGTTCACCTGATTCATCACTTGGTACAAAAAGTAGTGGACTGGATGTGGATTCAAACCAGAATAAGTCAACTATGGATCAAGGGTTTGAAATTTATTCTAGTGCTGAAGGTAATATTGTCAATTGTAAGCTCCCATTCACACAAAATGGAGATGTCTCTGCAAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGACGGCAGGATGTTCCAATATTGACTAAATATTTGCAAATACATTGGAAGGAATTTGGGAAGTCAGATGATGTGGGAAATGAATTTGTTGCATGGCCTCTTTATGGTGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTCGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCCAATGTTCAGCTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGGGATGCTGTAAGATTGACAGAAGAAATTCGCTGTCTACCTAATGAACATGAATCAAAGGTTCAAGTATTGGAGGTTGGCAAGATATCTCTTTATGCAGCAAGTTCTGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGCCGAGATTGGATATGGAGACCCCAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2673 0.4426 MDHARSTNGEDNATGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLSLNESDAYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDARRGSSARQAHDEVDVDVEADADADADADADADVALYEEDNWVPYDSPPDSSRKRSRRSLDANATTEYSDGTSGSSEDTGGQTCHQCRRSDRDRVTWCLKCDRRGYCDSCISSWYSDISLDEIQRTCPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRDLREATADGNKEPQTELAKASDQNIISKFPHWRSNDNGSIPCPPKEYGGCGHCSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNTDGPPEMGLNDLSLCQYSRREASDDNFLYCPASDDIKTDGIGNFRKHWKNGEPVIVKHVFDGSSVSSWDPMVIWRGILETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYLEGCVHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKAWQRTKIEIIQNAKAYEESEAKESHGDPQIFSRGSSPDSSLGTKSSGLDVDSNQNKSTMDQGFEIYSSAEGNIVNCKLPFTQNGDVSAKTHPGVLWDVFRRQDVPILTKYLQIHWKEFGKSDDVGNEFVAWPLYGGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEIRCLPNEHESKVQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00041 890 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Spst10g00041 890 ProSiteProfiles Zinc finger RING-type profile. 197 244 IPR001841 -
Spst10g00041 890 MobiDBLite consensus disorder prediction 1 20 - -
Spst10g00041 890 Pfam JmjC domain, hydroxylase 757 799 IPR003347 -
Spst10g00041 890 MobiDBLite consensus disorder prediction 642 667 - -
Spst10g00041 890 ProSiteProfiles JmjC domain profile. 524 820 IPR003347 -
Spst10g00041 890 MobiDBLite consensus disorder prediction 105 128 - -
Spst10g00041 890 MobiDBLite consensus disorder prediction 105 138 - -
Spst10g00041 890 MobiDBLite consensus disorder prediction 631 667 - -
Spst10g00041 890 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 192 257 IPR018866 -
Spst10g00041 890 Pfam WRC 17 57 IPR014977 -
Spst10g00041 890 Gene3D Cupin 412 829 - -
Spst10g00041 890 SMART cupin_9 531 820 IPR003347 -
Spst10g00041 890 SUPERFAMILY Clavaminate synthase-like 433 826 - -
Spst10g00041 890 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 325 854 IPR045109 GO:0032454|GO:0033169
Spst10g00041 890 MobiDBLite consensus disorder prediction 175 196 - -
Spst10g00041 890 MobiDBLite consensus disorder prediction 151 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00041 Spst-Chr10 440048 447443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00041 17 57 GRF Transcription Factor Family AT3G13960 46.341 1.92e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst10g00041 JmjC 2.3e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00041 K15601 - gmx:100801287 1548.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00041 10 440048 447443 Spst10g00041 10 440048 447443 ECH