LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst10g00040	ATGGCGGAAACCACGGCGACAGAAGCCGTTCGCGAGGAAGAAGAAAAGAAAGAAGAAGCTGAGGAACAAAGTTTCGAAGAGCTCGGCGTGGACGCTCGTCTCCTTCGCGCCTTACACAAGAAAGAAATCGAGAAACCCACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTGCAAGGTAAGGACGTGGTTGCACGCGCCAAAACTGGTTCCGGAAAGACCTTAGCTTATCTTCTCCCATTGCTTCAGAAACTGTTTACTGCTAGTGCCGAGCGGAGGAAGCTCGCGCCCAATGCTTTTGTCCTTGTCCCAACTCGCGAACTGTGTCAACAGGTGTATGCGGAAGTGTTGTCGCTGGTTGAGTTGTGCAGAGTTCAACTGAAAGTTGTGCAGCTGAATAGTAACATGCTTGCTAATGACCTGCGGGCGGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCGTAGCGAAGTGTTTGTCCGGTGGCATACTTAAGGCGGCATCCATTAACGAATCGCTTGAAACCCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGATATAAAAGCTTTTACACCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACTTCAAGTACGGATGTTGACAAATTAAAGAAGTTGGTTCTACACAACCCATATATTTTGACTTTGCCTGAAGTGGGAAAAAATAAGGATGAGATCATTCCTAAAAATGTTCAGCAATTCTGGATCTCATGTTCTGCCAGTGACAAGTTACTTTACATCCTTGCCGTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACTAATACGATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGCATCAGATCTGCTGTTTTAAATCCTTTGTTGCCTCAGAATTCTCGTCTCCATATTCTGGAGGAATTCAATGCGGGCCTGTTTGATTACCTAATTGCAACAGATCTGAGTCAGTCAAAGGAAAAGGATAAAGTGCCTAAGGAAAGTAATGTTGTGTTACCGAAGTCTAGAAAACGTGCTAAAGTAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGGATTGACTTTAAAAATGTATTCACGGTTATTAACTTTGAAATGCCTCAAAATGTTGCGGGGTATGTACATCGAATTGGGCGTACAGGAAGAGCATACAATTCTGGTGTGTCTGTCTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAAAACGAAGGCACAAGTTCCATTACCGAGTTTCCCCACCTCACCAAGCATGCAGTTGAATCTTTACGGTATAGGGCAGAGGATCTTGCAAAGAGTGTAACAAGTATTGCCGTCCGCGAGTCACGTGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCACTTTGATACTAATCCAAAAGACCTAGATCTACTGAAGCATGATAAAGTTTTGAGCAAGAATGCACCACCTCCACACCTTCGTGATGTGCCTGACTACCTATTAGACAAGCCAACGAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCTATGGGGAATAATAATCGCCGCAAGGGATCCAAGAGAAAATTAAGAAAAGATGGAGATCCTCTGAAGGCTATATCCGCTTTGGCATCAAAAAGACCTCACAAAGTTAGGAAGACTGCTGGAAGCGATGGCAACAATAGTGGTGATAGACATAAACGCAAAAAGAATAAGGGTATTTGA	1806	0.4341	MAETTATEAVREEEEKKEEAEEQSFEELGVDARLLRALHKKEIEKPTPIQRVAIPLILQGKDVVARAKTGSGKTLAYLLPLLQKLFTASAERRKLAPNAFVLVPTRELCQQVYAEVLSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDILISTPACVAKCLSGGILKAASINESLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSTDVDKLKKLVLHNPYILTLPEVGKNKDEIIPKNVQQFWISCSASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPLLPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDKVPKESNVVLPKSRKRAKVKLDSEFGVVRGIDFKNVFTVINFEMPQNVAGYVHRIGRTGRAYNSGVSVSLVSPDEMDTLEEIRSFVGDDENEGTSSITEFPHLTKHAVESLRYRAEDLAKSVTSIAVRESRAQDLRNEILNSEKLKAHFDTNPKDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKPTKEAREMVKLARDAMGNNNRRKGSKRKLRKDGDPLKAISALASKRPHKVRKTAGSDGNNSGDRHKRKKNKGI	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst10g00040	601	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	23	51	IPR014014	GO:0003724
	Spst10g00040	601	SMART	ultradead3	42	255	IPR014001	-
	Spst10g00040	601	Gene3D	-	239	446	IPR027417	-
	Spst10g00040	601	MobiDBLite	consensus disorder prediction	540	601	-	-
	Spst10g00040	601	Gene3D	-	1	237	IPR027417	-
	Spst10g00040	601	Pfam	Helicase conserved C-terminal domain	263	406	IPR001650	-
	Spst10g00040	601	Coils	Coil	2	23	-	-
	Spst10g00040	601	CDD	SF2_C_DEAD	252	415	-	-
	Spst10g00040	601	MobiDBLite	consensus disorder prediction	1	24	-	-
	Spst10g00040	601	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	54	235	IPR014001	-
	Spst10g00040	601	PANTHER	RNA HELICASE	11	533	-	-
	Spst10g00040	601	SMART	helicmild6	292	406	IPR001650	-
	Spst10g00040	601	MobiDBLite	consensus disorder prediction	578	592	-	-
	Spst10g00040	601	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	14	236	IPR027417	-
	Spst10g00040	601	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	270	452	IPR001650	-
	Spst10g00040	601	Pfam	DEAD/DEAH box helicase	47	224	IPR011545	GO:0003676\|GO:0005524
	Spst10g00040	601	CDD	DEADc_DDX56	30	237	-	-
	Spst10g00040	601	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	247	431	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst10g00040	Spst-Chr10	429367	436675	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst10g00040	24	429	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.847	2.78e-38	144

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst10g00040	K14810		-	gmx:100800749	1004.59