Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00027 ATGAGTCGAGGAGGTGCAACTGCTCCGAAGGGCAAGAAGAAGGGTGTGACATTCACCATTGACTGCGCGAAGCCAGTGGAGGACAAGATCATGGACATTGCGTCTCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGCTGGCAAGGCCGGTGCCCTCGGTGACACCGTAGCCGTAACACGCGAGAAGACCAAGATCATTGTTACGTCCGACAGTAACTTTTCCAAACGGTACCTCAAGTACTTGACGAAGAAGTATTTGAAGAAGCACAATGTTCGTGACTGGCTCAGAGTGATCGCTTCTAACAAAGATAGAAGCATTTATGAACTTAGGTACTTCAACATTGCTGAGAATGAAGGAGAGGAAGAAGATTAG 375 0.4747 MSRGGATAPKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVAGKAGALGDTVAVTREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSIYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00027 124 Gene3D - 6 124 IPR038526 -
Spst10g00027 124 PANTHER 60S RIBOSOMAL PROTEIN L22 3 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Spst10g00027 124 FunFam 60S ribosomal protein L22-2 5 124 - -
Spst10g00027 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00027 Spst-Chr10 310100 310652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00027 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 84.677 1.35e-66 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00027 K02891 - gmx:100790071 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00027 10 310100 310652 Spst10g00027 10 310100 310652 ECH
Spst6g00308 6 3061411 3062307 Spst10g00027 10 310100 310652 ECH
Spst10g00027 10 310100 310652 Spst6g00308 6 3061411 3062307 ECH
Spst10g00027 10 310100 310652 Spst7g01445 7 63235494 63236642 ECH
Spst6g00308 6 3061411 3062307 Spst10g00027 10 310100 310652 PCT