Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00024 ATGCCTCAGTACAATCGAGTCAAACTCACCATTGATGGAAGTTCCTGGGAAATGCTGGCAAGTAGGCATGCCCCTGGGATCGATCTCAAGGCCGGAGGTAAGAGTAAAAAGACCAAAAGGACAGCACCAAAGTCCAATGATATCTATCTCAAGCTCTTGGTTAAGCTTTATCGCTTCCTTGTCCGGAGAACTGGCAGCAATTTCAATGCTGTTATACTCAAGCGATTGTTCATGAGCAAGGTTAACAAGCCCCCACTTTCTTTGTCAAGGTTGATTAAGTATACCAAGGGGAAGGAAGATAAGATTGCTGTGGTGGTGGGGACTATAACTGATGATATTCGTGTTTATGAAGTTCCACCCTTGAAAGTTACAGCACTTAGGTTTACGGAGACTGCTCGAGCAAGAATTGAAAAGGCTGGTGGTGAATGCTTGACATTTGATCAGTTGGCTCTTAGGGCTCCTCTTGGACAGAACACGGTCCTTCTTAGAGGCCCGAAGAATGCTCGTGAAGCCGTGAAGCACTTTGGTCCTGCTCCTGGTGTTCCTCACAGCCACACCAAACCTTATGTTCGATCAAAGGGAAGGAAGTTCGAGAGGGCTAGAGGAAGGAGGAACAGCCGTGGATTTAGGGTGTGA 636 0.4701 MPQYNRVKLTIDGSSWEMLASRHAPGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKYTKGKEDKIAVVVGTITDDIRVYEVPPLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00024 211 Pfam Ribosomal protein 60S L18 and 50S L18e 26 211 IPR021131 -
Spst10g00024 211 PANTHER 60S RIBOSOMAL PROTEIN L18 26 211 IPR000039 GO:0003735|GO:0005840|GO:0006412
Spst10g00024 211 FunFam 60S ribosomal protein L18 25 211 - -
Spst10g00024 211 SUPERFAMILY Ribosomal proteins L15p and L18e 44 163 IPR036227 -
Spst10g00024 211 Gene3D - 26 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00024 Spst-Chr10 276202 280163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00024 27 211 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 6.29e-103 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00024 K02883 - gmx:100791657 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00024 10 276202 280163 Spst10g00024 10 276202 280163 ECH
Spst6g00305 6 3040701 3042533 Spst10g00024 10 276202 280163 PCT