Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00022 ATGAGCGAGGAAGGTGGAGGAATCAAGAAGAGAGTCATCATCATTGGCGTCGCTACCATCTTCCTTGTTGCTATGGTCGTTGCCATCGCATTTAGCGTCAACCTTACGGACGGTTCCGATGCCGAAGAAGCTGAGAACCACATTGTTGCCTCTGTGAAAGCGGTGAAAACCATCTGTAAACCCACAGATTACCGGAAAGAATGTGAGACAAGCCTGAGACAAGAGGCTGGGAACACCACAGACTTCAGAGAACTCATTAAAATTGCATTCAATGTAACCATGAAGAAAATGAGTAAAGGACTCAGAAAAACAGATCTCTTGCGAGAGGTTGAGACTGACCCCAGAGCCAAGATGGCACTTTCAACATGCAAGCAACTCATGGATCTTTCCATCGGGGAATTCAAGAGATCAATTGATAAAATGGGCAAGTTTAATCTCGACAATCTCCACAACATCCTGAGTAGTTTAAGCGTTTGGCTTAGCGGTACCATCACTTACCAAGAGACTTGTTTGGATGGCTTCAAGAACACCACCACCGGAGCAGGGAAGAAGATGAGGGACATTTTGACCAGTACCATGCACATGAGCAGCAATGCCCTGGCCATCATCGAGGAACTTGCAAATACTGTCTTGGATATGGATGGAATGGCAAGTGGGGATCGCCAGCTTGGCGAGAATGATCAACATGTTTTCAGTAACGGTGAGGCTATTCCCTCGTGGGTTGCTGCTGCTGACGATGATGATTGTGATGATGGTGGTGTTGGTGTTCGCAGACTCCTTCATGGAAGTTCCCACAAACTCAAGGCTAATGCGGTTGTGGCCAAAGATGGTAGTGAAAAGTTCAAAAGCATCAATCAGGCACTGAAGATGGTGCCTAAGAAGAACAAAAAGCCATTCGTGATTCATATTAAGGAGGGTGTTTATCATGAGTATGTTGAAGTCACTAAAACAATGACTCGTGTGGTGATGGTGGGTGATGGTGGGAACAAGACACGAATCACTGGCAACAAAAACTCTTTAGATGGAACCACTACTTACAGAACCGCCACAGTTGGGTTTGAGAATTCTGCTGGCCCCGACAAACATGAAGCAGTAGCCTTAAGGGTCCAAGCAGACAAGGCCATTTTCTACAGATGTTCAATGGATGGGTACCAGGACACACTGTACGTTCATACCATGCGTCAGTTTTTTCGGGATTGCACCATTTCAGGCACTACAGACTTTGTCTTCGGTGATGCAGTCACTGTTTTTCAGAACTGCACTTTCGTGGTGAGAAAGCCATTGAAAGACCAACAATTAATTGTGACAGCACAAGGTAGAAAGGAGAGGCACCAACCATCAGGAATAGTGATCCAAGGAAGCTCTATTGTGGCTAATCATACAGTGAAGTTAGAGAAGAAGGCTTACCTAGCTCGTCCATGGAAGAGTTACTCGAGGACCATCTTCCTGAACAATTACATGGAGGATTTGATTCAACCTGAAGGGTATACACCATGGCAAGGACTACGGGGTCCTTCAGGTATGAACAATTGTTTCTATGCTGAGTACAATAACAAGGGTCCTGGTTCAAACAAATCCGAGCGTGTAAAATGGCGTGGGATCAAGGAACTCACTTCAGAATCCGCAAGCAGTTACTCACCGTCCATATTTTTTCATGGAGATGATTGGATTAAAATTACTAGGATTCCTTACTACTCAACCACCGTCCCCAGGCATTAA 1719 0.4538 MSEEGGGIKKRVIIIGVATIFLVAMVVAIAFSVNLTDGSDAEEAENHIVASVKAVKTICKPTDYRKECETSLRQEAGNTTDFRELIKIAFNVTMKKMSKGLRKTDLLREVETDPRAKMALSTCKQLMDLSIGEFKRSIDKMGKFNLDNLHNILSSLSVWLSGTITYQETCLDGFKNTTTGAGKKMRDILTSTMHMSSNALAIIEELANTVLDMDGMASGDRQLGENDQHVFSNGEAIPSWVAAADDDDCDDGGVGVRRLLHGSSHKLKANAVVAKDGSEKFKSINQALKMVPKKNKKPFVIHIKEGVYHEYVEVTKTMTRVVMVGDGGNKTRITGNKNSLDGTTTYRTATVGFENSAGPDKHEAVALRVQADKAIFYRCSMDGYQDTLYVHTMRQFFRDCTISGTTDFVFGDAVTVFQNCTFVVRKPLKDQQLIVTAQGRKERHQPSGIVIQGSSIVANHTVKLEKKAYLARPWKSYSRTIFLNNYMEDLIQPEGYTPWQGLRGPSGMNNCFYAEYNNKGPGSNKSERVKWRGIKELTSESASSYSPSIFFHGDDWIKITRIPYYSTTVPRH 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00022 572 CDD PMEI-like_3 57 208 - -
Spst10g00022 572 Pfam Pectinesterase 270 554 IPR000070 GO:0030599|GO:0042545
Spst10g00022 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 208 IPR035513 -
Spst10g00022 572 SMART PMEI_2 50 202 IPR006501 GO:0004857
Spst10g00022 572 FunFam Pectinesterase 51 207 - -
Spst10g00022 572 SUPERFAMILY Pectin lyase-like 268 566 IPR011050 -
Spst10g00022 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 206 IPR035513 -
Spst10g00022 572 FunFam Pectinesterase 4 267 568 - -
Spst10g00022 572 PANTHER PECTINESTERASE 19 558 - -
Spst10g00022 572 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Spst10g00022 572 NCBIfam pectinesterase inhibitor domain 48 206 IPR006501 GO:0004857
Spst10g00022 572 Gene3D - 267 569 IPR012334 -
Spst10g00022 572 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00022 Spst-Chr10 256614 258561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00022 9 564 Carbohydrate Esterase AT3G05610 46.167 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00022 K01051 - gmx:100810853 817.379