Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00012 ATGGTAAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAGGGAGGCTCTGATGATTCGGATGAGGACTATGTGGTTTCAGATGATGGTAGAGAGGCATCTGACTATTATTGCTCCTCCTCCTTAGATGGATGTGCATCAGAGGAAAGTTTTGGTAGTTTTATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGTTTCAAAGAGTGAGGTATTTCAAAAGATCCAAGGCGAAAAAAGGAACTGCTGGTAAGCGGAAAAATGTCAGTAAAAACTCACACAAGAGAGGTAGGAGTACATATGAAGAGGAAGAGGAGGAGGAGGACGAGGAAGAGGAGGTGGAAGAAGAGGAAGAGGAAGAAGAATACAAAGAGGAGGAGGAAGATGAAATTCAAGAAGTGGGGAATTTCAATAGGTCAAAGTCCAAAAATGGTGTATGCAGTAAGAAAAGAAGTGCAGGAAAAATCTCCCCAAAGAGGGGAAGGAAAATACATGCAGAACAACTGGAAGATGAGGAAGAGGTCAAATTGGAGGAGGATGAGGAAAAGAAGGAGAAAGTGGACGGAGGTGGAGTTGAGGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGACTTTAACTATGACGATGAGGATGAGGATGATGAATTTTTGCCAGAGGAAGAAGATTATTCAGATGAGGACGAAGAAATGAGAGGGAGAAAGAAGAACAATGATGCCATGAAAATGGACAAGAAGGTTTTGCAGAAGAAAAGGTCTTCTGTGGTTTCAGCTAGAGGTAGAAAAAGACAGAGTTCTAGACCATCAAAGAAGCCCTTGAGAAACAAAAGAAGAAAGAATGGGAGATTAAGGAAGAAAGTAAGATGTAAAGATGAAGATGAAGATGAAGATGATTTTATAGATAATAGCCCAACCATGAGGACAACAAGTAGGAGAAAACGGGGCCTGAAGAGAAAAAGAGTGCTTCTTTCAGACTCAGAATATGCTTCTTCTGGATCATCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCAAATAAACAATGAAGAGGTTGGTGTCTGTGTGGAACAAATTCAGCTGCGGAAACCACCAGTTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAGAAGGTGGAGGATTTAAAAAGTGAGATGGGTAAGCAAGTCTGTGGAATTTGTCTATCCGAAGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGTTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAACCTGCACGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGGCCTCATGCTACTATGTGATGTCTGTGATTCCCCTGCGCACACATATTGTGTTGGGTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTCTGGGATCGTCAAGCTCCCAAGCTCAAGAAGGTGCGGCTGATCCAAGGGTGACAATCCAGAACCTTCCTGTTAGACCACCCTCCGCTCTACATGTACGAGAAAGTATAGACCTCAACCTGATTTCATCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGAATCTTCCACCTTCTAGATTTAGTGGTAGAAGTGTTGAAGGATCTTCTCCTGTATCTGGAGGGGCACCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAATTACTTTCAATAGATAGGATGACTTCTACACCTGGCAGAACCACCAATGGTATTTCATCTACCAGTTCAACTAGTAACTTATATAGCTCTCAATTTGATCAAAGTAGGGGAACCACCACTCTTCATGCAACGACACAGGATGTGGGAACATCATACCACACATTTTTTGATGAGAGATTATGCAACAATACCTCTCCATTAATGCAGAACGGGGCATTATGGCCTGGACTTATGGGGACACCCCCAGCACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAACATTGTTCCTGATGATGGCTTATCCCCTACTGCCAAAGAAGAGAGTAACTTTCACATTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAGAGCTTGTCCCAAAATATCGAATTAGGCCACAGTACTTTGAAGGATATTGCTAGGAGTTCTATGCACACCATCCTAGCAGCTTGTGATCTTGAGCACAAGAACAGTGAAGTTTGCAATGTACCTCCTCCATCTGCCTGTCCGCACATGGAACTAATGGCTGGTGGGCCAACGAGTCTGATTAAAGGTTGCTGCTCGTCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGATTTTCGTCACAGTGGTTACGATTAGGTCTATAG 2643 0.4344 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGREASDYYCSSSLDGCASEESFGSFMEEEEEEEEEEEEFQRVRYFKRSKAKKGTAGKRKNVSKNSHKRGRSTYEEEEEEEDEEEEVEEEEEEEEYKEEEEDEIQEVGNFNRSKSKNGVCSKKRSAGKISPKRGRKIHAEQLEDEEEVKLEEDEEKKEKVDGGGVEEEEEGDRDGEDEDFNYDDEDEDDEFLPEEEDYSDEDEEMRGRKKNNDAMKMDKKVLQKKRSSVVSARGRKRQSSRPSKKPLRNKRRKNGRLRKKVRCKDEDEDEDDFIDNSPTMRTTSRRKRGLKRKRVLLSDSEYASSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHQINNEEVGVCVEQIQLRKPPVRKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDVCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQAQEGAADPRVTIQNLPVRPPSALHVRESIDLNLISSPRAAFNQGFGNLPPSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTSTPGRTTNGISSTSSTSNLYSSQFDQSRGTTTLHATTQDVGTSYHTFFDERLCNNTSPLMQNGALWPGLMGTPPAPDCEQVHQFSRSNIVPDDGLSPTAKEESNFHIAKEQLQSMVKSHLKSLSQNIELGHSTLKDIARSSMHTILAACDLEHKNSEVCNVPPPSACPHMELMAGGPTSLIKGCCSSCFDSFVGDVVKRVLDTRFSSQWLRLGL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00012 880 MobiDBLite consensus disorder prediction 59 74 - -
Spst10g00012 880 ProSiteProfiles Zinc finger PHD-type profile. 518 567 IPR019787 -
Spst10g00012 880 ProSiteProfiles Zinc finger RING-type profile. 428 470 IPR001841 -
Spst10g00012 880 MobiDBLite consensus disorder prediction 152 167 - -
Spst10g00012 880 MobiDBLite consensus disorder prediction 264 294 - -
Spst10g00012 880 Coils Coil 106 142 - -
Spst10g00012 880 MobiDBLite consensus disorder prediction 663 689 - -
Spst10g00012 880 Pfam PHD-finger 520 566 IPR019787 -
Spst10g00012 880 SMART PHD_3 520 565 IPR001965 -
Spst10g00012 880 MobiDBLite consensus disorder prediction 187 201 - -
Spst10g00012 880 PANTHER F18C1.6 PROTEIN 170 869 - -
Spst10g00012 880 MobiDBLite consensus disorder prediction 1 323 - -
Spst10g00012 880 SUPERFAMILY RING/U-box 427 476 - -
Spst10g00012 880 SUPERFAMILY FYVE/PHD zinc finger 490 566 IPR011011 -
Spst10g00012 880 MobiDBLite consensus disorder prediction 81 102 - -
Spst10g00012 880 MobiDBLite consensus disorder prediction 237 260 - -
Spst10g00012 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 491 IPR013083 -
Spst10g00012 880 Coils Coil 174 194 - -
Spst10g00012 880 Pfam Ring finger domain 427 470 IPR001841 -
Spst10g00012 880 MobiDBLite consensus disorder prediction 111 140 - -
Spst10g00012 880 Coils Coil 350 370 - -
Spst10g00012 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 568 IPR013083 -
Spst10g00012 880 MobiDBLite consensus disorder prediction 202 236 - -
Spst10g00012 880 SMART ring_2 428 469 IPR001841 -
Spst10g00012 880 MobiDBLite consensus disorder prediction 397 416 - -
Spst10g00012 880 CDD RING-HC_Topors 426 473 - -
Spst10g00012 880 ProSitePatterns Zinc finger RING-type signature. 447 456 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00012 Spst-Chr10 147932 151018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00012 515 564 C2H2 Transcription Factor Family AT3G01460 46.154 2.26e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst10g00012 PHD 3.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00012 - - vun:114191996 1290.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00012 10 147932 151018 Spst10g00012 10 147932 151018 ECH