Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00010 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAACACAGAGATGCGTTGAAGAGTGTTCGTGTTCCCTCCATCTCTTCGCCGCAGTCCACCTCCACCCGTGGCGGCGGTGGCCCCGTCATCGAGTTGGTCAGCACCTCGCTCCTCAATCCCAACCGCTCTTACGCTCCGCTTAGTACCGAGGATCCCAGCCATTCGAGGGGTCCAAATGCAATCAATGTGGGGCTACCTCCCGCGTGGGTGGATTTATCTGAAGAAATATCGGCAAATGTACAACGTGCACGCTCAAAAATGGCGGAATTGGCCAAGGCTCATGCAAAGGCATTGATGCCGTCATTTGGAGATGGAAAAGAAGACCAACATGCTATCGAGACCCTAACACATGAGATAACTGACTTAATAAAGAGGTCGGAGAAGAGACTCCGGAGACTTTCTGCTTCTGGACCTTCTGAGGATTCCAATGTCAGGAAAAACGTGCAGCGATCTCTTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTCCGCAAGAAACAATCAACTTATTTAAAGCGTCTCAGATTGCAAAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAACTTAAATGGAGGTAAATCAAGATATGAAGATGATGATTTGGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTGAAAAAAAATGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACAATCGTCGATAGAATAGACTACAATATTCAAAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAAAAAAAGGGGGGTATGATAATGTGTGCTACTGTGCTTGTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATATTGTGA 981 0.4485 MATRNRTLLFRKHRDALKSVRVPSISSPQSTSTRGGGGPVIELVSTSLLNPNRSYAPLSTEDPSHSRGPNAINVGLPPAWVDLSEEISANVQRARSKMAELAKAHAKALMPSFGDGKEDQHAIETLTHEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRYEDDDLDNMVFNEHQMAKLKKNEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMIMCATVLVIMCFVMLVLLIIKEIIL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00010 326 FunFam Syntaxin-43 77 284 - -
Spst10g00010 326 Pfam SNARE domain 266 318 IPR000727 -
Spst10g00010 326 SMART SynN_4 71 186 IPR006011 GO:0016020
Spst10g00010 326 Coils Coil 84 104 - -
Spst10g00010 326 MobiDBLite consensus disorder prediction 22 36 - -
Spst10g00010 326 Gene3D - 77 284 - -
Spst10g00010 326 PANTHER SYNTAXIN 84 311 IPR045242 -
Spst10g00010 326 SUPERFAMILY t-snare proteins 76 285 IPR010989 GO:0016020|GO:0016192
Spst10g00010 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 292 IPR000727 -
Spst10g00010 326 SMART tSNARE_6 225 292 IPR000727 -
Spst10g00010 326 ProSitePatterns Syntaxin / epimorphin family signature. 236 275 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst10g00010 326 CDD SNARE_syntaxin16 235 291 - -
Spst10g00010 326 MobiDBLite consensus disorder prediction 20 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00010 Spst-Chr10 132070 136105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00010 1 326 SNARE and Associated Proteins AT5G26980 77.370 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00010 K08489 - gmx:100796741 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00010 10 132070 136105 Spst10g00010 10 132070 136105 ECH
Spst1g02503 1 33709170 33713692 Spst10g00010 10 132070 136105 ECH