Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00009 ATGCTTTCTTCAATTGCAGGAGTTTTGGTCGGTCTATCCGTGAAGTCCTCCATTATGAATGGACAGCAGTTGGGGGACAAGTCAAGGTCTTCACATTGTCCTTGGGTCTTTCAAGGTCCAGCAAGTAAATACACGGTTGCTGGACCGGCTTGGGTTTTTGCAATGCCTGGTTCCAAACCTCCTCTTCCTTGCACTTGCATTGCCCGGAAACTTTTCAACTGCATACGTAGCTTAGTCAATTGTAGGGAAGATGAAACATTATACGGTTTTATCAAGACTTATGGAAACAACGCTAGCATCAGCGTACTTGGTTCTAGAATTTATGGACTTGAGAGAGGACTAGGTACTAAGTGGGTTAAAAGACTTGTAGCTACAAGAGCAGAAGGAAGTAAACAAAACACTTGGAACACTAAATCAAAAAGTACCAAGCATGAAATTTCTAGGGAGAAGATTTTAACAAGTGCTACTATGAATGTAAATGAAACACAGCTAGATCAGTTCCCGAAAACTCAGTGGCCTGAAGTACGAGAAATTGCTCAGTATAAAAACTTATCTGACCTACTCACTGTTATTGTTTTTGATCTTGAGACTACTGGGTATAGCAGAGTGAATGATCGCGTCATTGAGATTGCAGTTCGAGATCTCCAAGGTGGTGAGGATAGCACTTTCCAAACTCTTGTAAATCCTCAATGCCATGTTCCTAATTCACGTATTCATGGAATTGCTACCGATATGGTGAACAGACCTGATGTGCCAAGAATGGAAGACCTGGTACCCATCTTGTTACAGTACATTAAAAGGCGTGAGAAACATGGAGGATATGTATTATGGGTTGCACATAATGCTCGGACTTTTGATGCACCTTTCCTCATTCACGAGTTCATTCGTTGTTCCATGGAGATTCCTCAAAATTGGCTGTTTTTGGACACCCTTCCTCTGGCACGTGAGCTGATCAAGTCTGGAAAGAATCTTTCTTCGGCATCACTTGTTGCCCTTAGTGAGTTTTACGGAGTTGAAGTGGATGGATCAACTCACAGAGCCATGGTAGATGTGAACACATTGTCCCAGATACTCCCCATGTTGGCCTCTGATCTGAAGTTGACTTTATCCAGCCTTGTAAAAAAATCTTTCAACTTATCAGATTTGATGAAGGCTACGAAAAGGAAGGGTGGAATAATGTAG 1182 0.4205 MLSSIAGVLVGLSVKSSIMNGQQLGDKSRSSHCPWVFQGPASKYTVAGPAWVFAMPGSKPPLPCTCIARKLFNCIRSLVNCREDETLYGFIKTYGNNASISVLGSRIYGLERGLGTKWVKRLVATRAEGSKQNTWNTKSKSTKHEISREKILTSATMNVNETQLDQFPKTQWPEVREIAQYKNLSDLLTVIVFDLETTGYSRVNDRVIEIAVRDLQGGEDSTFQTLVNPQCHVPNSRIHGIATDMVNRPDVPRMEDLVPILLQYIKRREKHGGYVLWVAHNARTFDAPFLIHEFIRCSMEIPQNWLFLDTLPLARELIKSGKNLSSASLVALSEFYGVEVDGSTHRAMVDVNTLSQILPMLASDLKLTLSSLVKKSFNLSDLMKATKRKGGIM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00009 393 SUPERFAMILY Ribonuclease H-like 189 364 IPR012337 -
Spst10g00009 393 CDD DEDDh 191 358 - -
Spst10g00009 393 Gene3D - 188 380 IPR036397 GO:0003676
Spst10g00009 393 SMART exoiiiendus 189 367 IPR013520 -
Spst10g00009 393 FunFam Exonuclease DPD1 chloroplastic/mitochondrial 188 371 - -
Spst10g00009 393 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 130 383 IPR040393 GO:0008408
Spst10g00009 393 Pfam Exonuclease 191 357 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00009 Spst-Chr10 119312 124114 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00009 - - gmx:100807138 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02312 1 31814475 31823050 Spst10g00009 10 119312 124114 ECH
Spst10g00009 10 119312 124114 Spst10g00009 10 119312 124114 ECH
Spst1g02312 1 31814475 31823050 Spst10g00009 10 119312 124114 PCT