Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00008 ATGTCCTATCGCCCAAGCGGGAACTCCAGGACCGATGTCCGCCGGAATCGTTACAAGGTGGCGGTGGACGCTGAGGAAGGTCGGAGACGGCGAGAAGACACCATGGTGGAGATCCGCAAGAGCCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGCGAGGGGCTCCAACCTCAACAGATGCCTGCTTCCATTCACTCTACTTTGGTAGAGAAGAAGCTGGAACACCTACCGTCAATGGTTGCTGGTGTTTGGACTGAGGACAATAACCTACAGCTCGAGGCAACTACTCAGTTTCGGAAGTTGCTTTCGATTGAACGAAGTCCACCGATAGAGGAGGTTATTCAGACTGGTGTGGTTTCTCGTTTTGTCGAGTTCCTGATGAGGGAAGACTTTCCGCAATTACAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACCAAGGTGGTGATTGACCATGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCAAGTGATGATGTCCGTGAGCAGGCGGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGACCTTGTTCTCAGTCACGGGGCATTGCTTCCTTTGTTGGCACAATTGAATGAACAGGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCGCGTCTTATCCATTCAAATGATGAAGAAGTATTGACTGATGCATGTTGGGCACTTTCTTATCTCTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTACTGCATCCATCTCCTTCAGTACTAATTCCTGCACTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAAACACAGGTTATCATCAATCATCAGGCTCTTCCTTGCCTTCTGAGTCTGTTGACCAATAATTATAAGAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATTTAATTACTCCTCTGGTCAACTTACTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCCCATGAACAAATCAAGTTCCTAGTAAGTCAAGGGTGTATTAAGCCCTTATGTGACCTTCTCATCTGTCCCGACCCTAGAATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCCTGAAGGTGGGAGAAGCTGATAAAAGTATTGGCAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGATACCGAGGGGCTGGAGAAAATTGAGAACCTTCAGAGTCACGACAATACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATACTGGTTGGAGGAGGAAGACGAGACTATGCCTCCTGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTAACAATGAGACTCCTGCTGTGCCTTCCGGTGGATTCAACTTTAATTAG 1599 0.4622 MSYRPSGNSRTDVRRNRYKVAVDAEEGRRRREDTMVEIRKSRREESLQKKRREGLQPQQMPASIHSTLVEKKLEHLPSMVAGVWTEDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLSLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLITPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKSIGNTGDVNLYAQMIDDTEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGNNETPAVPSGGFNFN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00008 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Spst10g00008 532 PIRSF Importin_alpha 6 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Spst10g00008 532 FunFam Importin subunit alpha 13 52 - -
Spst10g00008 532 Gene3D - 74 497 IPR011989 -
Spst10g00008 532 Gene3D - 13 52 IPR036975 GO:0006606
Spst10g00008 532 MobiDBLite consensus disorder prediction 1 61 - -
Spst10g00008 532 FunFam Importin subunit alpha 74 497 - -
Spst10g00008 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Spst10g00008 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Spst10g00008 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Spst10g00008 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Spst10g00008 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Spst10g00008 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Spst10g00008 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Spst10g00008 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Spst10g00008 532 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Spst10g00008 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Spst10g00008 532 PANTHER IMPORTIN ALPHA 14 502 - -
Spst10g00008 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Spst10g00008 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Spst10g00008 532 SMART arm_5 275 315 IPR000225 GO:0005515
Spst10g00008 532 SMART arm_5 106 147 IPR000225 GO:0005515
Spst10g00008 532 SMART arm_5 403 443 IPR000225 GO:0005515
Spst10g00008 532 SMART arm_5 190 232 IPR000225 GO:0005515
Spst10g00008 532 SMART arm_5 360 400 IPR000225 GO:0005515
Spst10g00008 532 SMART arm_5 234 273 IPR000225 GO:0005515
Spst10g00008 532 SMART arm_5 149 189 IPR000225 GO:0005515
Spst10g00008 532 SMART arm_5 317 358 IPR000225 GO:0005515
Spst10g00008 532 SUPERFAMILY ARM repeat 10 501 IPR016024 -
Spst10g00008 532 MobiDBLite consensus disorder prediction 10 52 - -
Spst10g00008 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00008 Spst-Chr10 115359 119195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00008 153 422 U-box Gene Family AT1G23030 22.963 2.73e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00008 K15042 - gmx:100789135 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00008 10 115359 119195 Spst10g00008 10 115359 119195 ECH
Spst1g02314 1 31837607 31842729 Spst10g00008 10 115359 119195 ECH
Spst10g00008 10 115359 119195 Spst1g02314 1 31837607 31842729 ECH
Spst1g02314 1 31837607 31842729 Spst10g00008 10 115359 119195 PCT