Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00004 ATGGAGATTCACAGAAGACGTTTCAAGGGAAGCTTCCTTAGCTTCTTTGAATGGAATGGCAAATCTCAAAGAAAGCAGCTTTGTGACAGTCCTAAGTTGCCTGAAATTTCAAAGGAAGGAAAGGAAAACTTGGACAGCATGCCAAAGTCAGAGGTCAATAGGATAAAAATGGATGACAATGGAGCAAATCGTAGTAATAATGCAAGTTGTGGTTTTGATTGTGCCTTATCAATTAGTAGTGATGAAGGGTATGGAACTAAAGCTCCAGGGTTACTAGCCAGACTCATGGGTTTGGATTCATTGCCGGTTTCAAATGTTTCTGAGCTCTCCTCATCATCCACTTCGTTATATGGCTCTAACTCTCTTGGATCTTCTCATTCTCGTGACGGGGATGCTCTTCACTCAACGGTTGACTATTGTTGTCTCGTGGATCTCATAAACATAGGACTTAAGCCGGTCAACTCTTCATGGAGTGTCATGGAATCAAAAGTAATAAACCCTGCAATGAAGAGATTTCAGACTGAAGTGTTGCCTCCAAGGTCTGCCAAAATCATTCCAGTTACACACAACAAACTTTTGTCTCCTATCAAGAGCCCTGGCCATTTTCCTCCTAAGCATGCAGCTCATGTAATGGAGGCAGCTGCCAAAATAATTGAAGCAAGTCCCCAGCCATGTATGAGGAATAGAATTTCTTCGGCCGGACCTTCATCTGTACCCTTAAGAATTCTTTATCTGAAAGATAAATTGGAAGCTGCACAATATGAATCCATGTTCTCGTGTAAACACACTGTTAACCCTCTGAATGTCAAGCCTAGTGAGAGGAGAAACAGTTTGTATAAATCTGCTCCAAGTTTAAAAGATTCAAGAGATTCAGAAAAAAACAGTTCTTGTCGGTTGGCAAGCAAAGGAAAATCAGTTTCACTTGCAATTCCATCAACAACCAATGTTCATAGCCGTGATGAATTGACTTTGAATGTTAATAGGGGATATGTGAAGCGGAAGGGACATATTGATATAAAATCAAACAAGTTGCCTCGGAGCCAGAAGAAACAAATTACAGACCGGGCCAGGTTCATGCAGCAGAAAGCTTGTACAGGCCAGAATAACAATGTGCTTGGGAAGAATAACCAAAAGCTGAGTAGTGAAACCAACAAAGGTAATTTGGCTTCAAAGGCGGACTCCAATAAGCCAACACAAACTTGGTCTTCAGAAAGTTCTACTAGAGCAAAGAAGACCACCAAAAAGGGTGCTGTAAAAGCCAATAGTGAGTCCAAAAGGTCAGGCACAAGGGTAACTGGCACCCCAAAGGAAATTCCAGTTTCCAAAAGAATTTCCCAAAAGAAAAACTATATCAATAGAGATGTTCACAATGAGGGAAGAGGCACTCATACTGCAGCTAATAATTATGAAAACAAGTCCATAAAATGCAATGTTACAACTGATGGAAGTATTAACCAGGATGCATTTAGCATGAAAGGTAGTAATGGTGTGATTTCATTTACATTTACATCTCCCTTGAGAAGAAACATGCCCGAGTTACAGTCCTCTGATGAGCAAATGATGGGAACAAGGAATAAAATTGATGCCAATTCTTGTAGCAATAATGATAAGCTCTATCCTAAAAAATCATCATTATCTCCTCCCAGGTTACATGTAATAGATGGTGATGCTTTAAGTGTCCTTTTGGAGAAAAAGCTGCAAGAATTGACATCTAGAATTAACCCAACTCAGTGCTCCCCGATGAAAGAAGGGACTGCTGCTGGTTTGGAAGACAGAAGGTTTCACCCCAACCTGTTTAGTAATAAATTGGACAGCAGGCATGACAATTGTTTGTCAAGTGATAATATGGTGCTTAACATGAATCAGCAACTGCAGACATCCGAATCAATGGAAGGGCCTAGCTGTAGCAGCAGCAGTGAAAGCAGAAGTGGAAGTTACTTAGATAGTGTCTATGGCAGCACAGTTTATTCTTCCATGCAAGATGAAGAGGTGACTGATTTTACTCCAATGAATGAATCTCTACCACTCGAAAACGAGGCCGAATGGTCTGAGCAAAGCTCTTCCATAGTGCTGGGGGATGGCGTGGTTGCCATTGAACAATCAAGTGTAATCCCAAATTCAGTCGAATTTACAAGCTCATCTAGGAACGTGGAACTTGAATATGTAAAGGATATACTCAACAATGCAGAGCTGATGACAGAAGAATTTGTGATGGGTGAGACAGATAAGATCATGATGCCAAATCTCTTTGATATGTTGGAGACTAAGAGCATTGTGGCAGAAAACTATGAGAAGTACTCTAAGATTGAGAGGAGGGTTATGTTTGACACTATCAGTGAGTGCTTAGAGTTAAGATGTAGACAAGTTTTTGTTGGAAGCTGCAAAGCATGGCTTAAATGGGTGGCTTCAGTGCAGAAGAAAAGCTCTTTAGCAGAAGAGTTGTACAAAGAAATCTTGAGCCTTAGAAGTATGGAAGAATTAGTCGTGGATGAACTTGTCTGCAATGACATGAGTGCAGGATGGCTTGACTTTAACACTGAAGCCTCTGAAAAGGGTTCAGAACTTGAGTTTGATGTTGTAACCTGTTTGATGAATGAATTGGTTTCTGATTTGTTACACTTTTAA 2625 0.4053 MEIHRRRFKGSFLSFFEWNGKSQRKQLCDSPKLPEISKEGKENLDSMPKSEVNRIKMDDNGANRSNNASCGFDCALSISSDEGYGTKAPGLLARLMGLDSLPVSNVSELSSSSTSLYGSNSLGSSHSRDGDALHSTVDYCCLVDLINIGLKPVNSSWSVMESKVINPAMKRFQTEVLPPRSAKIIPVTHNKLLSPIKSPGHFPPKHAAHVMEAAAKIIEASPQPCMRNRISSAGPSSVPLRILYLKDKLEAAQYESMFSCKHTVNPLNVKPSERRNSLYKSAPSLKDSRDSEKNSSCRLASKGKSVSLAIPSTTNVHSRDELTLNVNRGYVKRKGHIDIKSNKLPRSQKKQITDRARFMQQKACTGQNNNVLGKNNQKLSSETNKGNLASKADSNKPTQTWSSESSTRAKKTTKKGAVKANSESKRSGTRVTGTPKEIPVSKRISQKKNYINRDVHNEGRGTHTAANNYENKSIKCNVTTDGSINQDAFSMKGSNGVISFTFTSPLRRNMPELQSSDEQMMGTRNKIDANSCSNNDKLYPKKSSLSPPRLHVIDGDALSVLLEKKLQELTSRINPTQCSPMKEGTAAGLEDRRFHPNLFSNKLDSRHDNCLSSDNMVLNMNQQLQTSESMEGPSCSSSSESRSGSYLDSVYGSTVYSSMQDEEVTDFTPMNESLPLENEAEWSEQSSSIVLGDGVVAIEQSSVIPNSVEFTSSSRNVELEYVKDILNNAELMTEEFVMGETDKIMMPNLFDMLETKSIVAENYEKYSKIERRVMFDTISECLELRCRQVFVGSCKAWLKWVASVQKKSSLAEELYKEILSLRSMEELVVDELVCNDMSAGWLDFNTEASEKGSELEFDVVTCLMNELVSDLLHF 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00004 874 MobiDBLite consensus disorder prediction 365 407 - -
Spst10g00004 874 MobiDBLite consensus disorder prediction 365 439 - -
Spst10g00004 874 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 870 - -
Spst10g00004 874 MobiDBLite consensus disorder prediction 266 284 - -
Spst10g00004 874 MobiDBLite consensus disorder prediction 625 645 - -
Spst10g00004 874 Pfam Domain of unknown function (DUF4378) 718 866 IPR025486 -
Spst10g00004 874 MobiDBLite consensus disorder prediction 266 304 - -
Spst10g00004 874 Pfam DUF761-associated sequence motif 79 107 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00004 Spst-Chr10 62712 66337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00004 3 872 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 31.400 5.49e-87 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00004 - - vra:106771019 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00004 10 62712 66337 Spst10g00004 10 62712 66337 ECH
Spst1g02320 1 31892470 31896072 Spst10g00004 10 62712 66337 ECH
Spst1g02320 1 31892470 31896072 Spst10g00004 10 62712 66337 PCT