Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06476 ATGGACAGTATTCTGGGTCTTCTCAAACTTCGTATTAAAAGAGGTATTAACCTCGCAATTCGCGATTCTCGTTCCAGCGACCCTTATGTTGTTGTCAACATGGGAGAACAGTTGATACAGAAGCTGAAGACTCGTGTGGTAAAAAATAACTGCAATCCTGAGTGGAATGAAGAACTGACCCTTTCAATAAAGGATGTTAATGTCAAATCTCCAATACATCTGACAGTTTATGACAAAGACACATTTTCTGTGGATGACAAAATGGGTGAAGCAGAGATAGAGTTGAAAGAATATTTTGAATGTTTTAAGATGGGTTTGGAGAAGCTCCCAAATGGATGTGCAGTGAAGAGGATTCAACCAAGTAGGACTAACTGCCTTGCTGAAGAGAGCAGCTGCATTTGGCAAAATGGGAATATCATCCAAGAAATGATTCTAAGATTGAAAAATGTTGAGAGAGGGGAACTAGTTGTGGAAATTCAGTGGGTTGATATTCCAGGTTGCAAGGGCTTATCAGAGGTGCAATTCTGA 528 0.3996 MDSILGLLKLRIKRGINLAIRDSRSSDPYVVVNMGEQLIQKLKTRVVKNNCNPEWNEELTLSIKDVNVKSPIHLTVYDKDTFSVDDKMGEAEIELKEYFECFKMGLEKLPNGCAVKRIQPSRTNCLAEESSCIWQNGNIIQEMILRLKNVERGELVVEIQWVDIPGCKGLSEVQF. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06476 175 Gene3D C2 domain 5 168 IPR035892 -
Seca9g06476 175 Pfam C2 domain 7 97 IPR000008 -
Seca9g06476 175 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Seca9g06476 175 SMART C2_3c 7 107 IPR000008 -
Seca9g06476 175 CDD C2_ArfGAP 5 153 - -
Seca9g06476 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 168 IPR044562 -
Seca9g06476 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 162 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06476 Seca-Chr9 182636652 182638458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06476 41 171 C2H2 Transcription Factor Family AT1G70790 67.669 1.62e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06476 - - gmx:100788395 287.345