Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06467 ATGAGCAAATCCAACACTACTTTCTTTCACAATCTCATAAAGCCTTTCAAATTCGGATCCAGTAAACAGGCGAAGAGTGAAGACGACATAGAGAACATTACTGCACAGGAACAGAAGACCTTTTCTTACGAAACATTGGTTGCTGCTACAAAGAACTTTCACGTTCTTAACAAGCTTGGTGAAGGAGGCTTTGGACCCGTCTACAAGGGGAAGTTGAATGATGGGAGAGAGATAGCAGTGAAGAAGTTATCACAAAGGTCATCTCAAGGGAAGACACAGTTCATAAACGAGGCAAAGTTGTTGACTCGTGTGCAGCATCGTAATGTGGTGAATTTGTTTGGCTATTGTGCCCACGCCTCACACAAGCTTCTAGTTTACGAGTATGTCCCACGTGAGAGCCTTGATAAGTTTCTATTCACACACAAGAAAGCAGAGCTAGATTGGAAACGTAGGTTTGACATAATCAATGGGGTGGCAAGGGGTTTGCTTTATCTACACGAAGACTCACACAATTGCATAATCCATCGTGACATAAAGGCTGCAAATATCTTAATCGATGAAAAATGGGTGCCTAAGATTGCAGACTTTGGCCTTGCACGCCTCTTCCCCGAAGATCAAACTCATGTTAATACACGTGTGGCTGGAACCAATGGGTATATGGCTCCGGAGTACATGATGCATGGACATCTAACGGTGAAGGCAGACGTGTTTAGCTTTGGTGTTTTGGTGTTGGAGCTGATCACTGGCCATCGTAACTCCTCCTTTAATTTCGACAACGCCATCAATCTCCTCGACTGGGTAAAAGCATACAAGCTTTACAAGAAAGGGAGGGCGTTAGAAATGGTGGACCCCACAATAGCATCTTCTGTGATAACAGAACAAGTTGAAATGTGCATTAAATTAGGTCTATTGTGCACTCAAGCTGAACTTCAGCTGCGTCCAACAATGGGGCGTGTGGTGGTGATGCTATCAAAGAAGCCAAGCCACATGGAAGAACCAACAAGACCAGGCATACCTGGTTCCAGATACAAATCAAGATTACCGCCAACAATCTCTTCTTCTTCTTCCACTGCTGGTGCTCATGATGATTCCTCTAACACTAATTTTGATTCAAGCAATTATGGCACTACTATTTCTAGAACAAGAACAAGCTCTGCTAGCACAGAATCAAACTCGCGAGGAAAACGCCCAATGCAAGCTTAG 1203 0.4381 MSKSNTTFFHNLIKPFKFGSSKQAKSEDDIENITAQEQKTFSYETLVAATKNFHVLNKLGEGGFGPVYKGKLNDGREIAVKKLSQRSSQGKTQFINEAKLLTRVQHRNVVNLFGYCAHASHKLLVYEYVPRESLDKFLFTHKKAELDWKRRFDIINGVARGLLYLHEDSHNCIIHRDIKAANILIDEKWVPKIADFGLARLFPEDQTHVNTRVAGTNGYMAPEYMMHGHLTVKADVFSFGVLVLELITGHRNSSFNFDNAINLLDWVKAYKLYKKGRALEMVDPTIASSVITEQVEMCIKLGLLCTQAELQLRPTMGRVVVMLSKKPSHMEEPTRPGIPGSRYKSRLPPTISSSSSTAGAHDDSSNTNFDSSNYGTTISRTRTSSASTESNSRGKRPMQA. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06467 400 FunFam Cysteine-rich receptor-like protein kinase 2 129 331 - -
Seca9g06467 400 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 370 - -
Seca9g06467 400 SUPERFAMILY Protein kinase-like (PK-like) 38 347 IPR011009 -
Seca9g06467 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Seca9g06467 400 CDD STKc_IRAK 59 325 - -
Seca9g06467 400 SMART serkin_6 53 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06467 400 Gene3D Transferase(Phosphotransferase) domain 1 129 335 - -
Seca9g06467 400 MobiDBLite consensus disorder prediction 325 400 - -
Seca9g06467 400 FunFam Cysteine-rich receptor-like protein kinase 10 17 128 - -
Seca9g06467 400 Gene3D Phosphorylase Kinase; domain 1 16 128 - -
Seca9g06467 400 MobiDBLite consensus disorder prediction 346 400 - -
Seca9g06467 400 ProSiteProfiles Protein kinase domain profile. 53 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06467 400 Pfam Protein tyrosine and serine/threonine kinase 54 320 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06467 Seca-Chr9 182491307 182498799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06467 31 369 Receptor kinase-like Gene Family AT4G11530 48.266 5.49e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca9g06467 PK_Tyr_Ser-Thr 2.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06467 - - gmx:100811523 583.948