Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06454 ATGGAGAGAGATTTCTTGGGTCTACGCTCAAAATCAAACGAATCATTGTCTGTGCCGAAGGAAGAGATCAACAATGATGGCTGTAAAGACTCAGGCTTCATAAAAGGTTCAGTGGTAAAATGGCCCTTCTCAAATGAAGTCTCTGCTCATCCCCAATTGATGTCTTTCAATGTTTCAGAAGATGACAAGGCTAAAATGAGGGTGTCTGATTCCATCACATCTGCTGGATTTTTGGCCATCCCAAAAGATGCATTTGACTCTACTCAGAAACGTGCTGGGGCTGAACTACAGAAATCTTTCAATCATGATGGACATGGTGGCATTCATTTTTCCCTGACTCCGTATCCTGTACAACATGATGTGAATTCTGTGAATCATCCTCATGATGTGAAGATGTTTTCAGTTTCCATGGGACATCCATTCCTAAAGAACCATTTTGTAACTGTTGGTCAGAACATGAATGGTGCTAATGTGAAGCAACCACTACTTGGGGGAATACCTGCTACAGCTCCTCATTCAGTTCTTCCTATCACTGGGGCTGTTGCTGGAATGACTAAATCATGTAACAGTGTGAAACCATCTGCACCTGCTCCTAAACTTACCATATTCTATGCGGGTACTGTGAATGTCTTTGATGATATCTCCCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGCTTATCTGCAGCCTCTAACATGGCACAGCCTAAAGTTCAGGCACCCAGCTCAAACTTGGCAGCAGGTGATGGTGTACCTGTGAGTCAACCTATAAATATACCATCATGCTCTGGTCTTCCAAGTCCTTTATCTGTTTCTTCACACACTGGTGCACAGTCAGGGAGTGGCTCAAGTAGCAATGATGAATTTCTGGCAAGTAAAACATCTGGAGGTCCCACCACTTCTGTTAGTAAAGTGGAGACTCCAAAAGTAGTCAATGCAACAACCATGTTTCCATCAGCTGTACCACAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGTAAGGAAAGGGTGATGAATGTAGCACCATATAACCACAACAAGAAGTCTGAGAATGTACCACTGCAGGACACAATGGTTGATAACATCTCTGCAACTACTGGTACTAATACTCCTTCAACCAAGCAAGGATAG 1149 0.436 MERDFLGLRSKSNESLSVPKEEINNDGCKDSGFIKGSVVKWPFSNEVSAHPQLMSFNVSEDDKAKMRVSDSITSAGFLAIPKDAFDSTQKRAGAELQKSFNHDGHGGIHFSLTPYPVQHDVNSVNHPHDVKMFSVSMGHPFLKNHFVTVGQNMNGANVKQPLLGGIPATAPHSVLPITGAVAGMTKSCNSVKPSAPAPKLTIFYAGTVNVFDDISPEKAQAIMLLAGNGLSAASNMAQPKVQAPSSNLAAGDGVPVSQPINIPSCSGLPSPLSVSSHTGAQSGSGSSSNDEFLASKTSGGPTTSVSKVETPKVVNATTMFPSAVPQARKASLARFLEKRKERVMNVAPYNHNKKSENVPLQDTMVDNISATTGTNTPSTKQG. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06454 382 SMART tify_2 193 228 IPR010399 -
Seca9g06454 382 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 141 354 IPR040390 -
Seca9g06454 382 MobiDBLite consensus disorder prediction 267 309 - -
Seca9g06454 382 ProSiteProfiles Tify domain profile. 193 228 IPR010399 -
Seca9g06454 382 Pfam tify domain 197 227 IPR010399 -
Seca9g06454 382 Pfam Jas motif 325 349 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06454 Seca-Chr9 182335241 182338945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06454 39 355 Tify Gene Family AT3G17860 36.310 3.83e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca9g06454 tify 4.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06454 K13464 - gmx:100807043 475.322