Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06453 ATGGAGAAAACTTGGTTCATTTTCACTTTTTTCTTTTCAATCAATTTCATAGCCTCCTCATCAGATACAATTAGCAACACCAACCTCACTACTCATGTGGACCAATCTGCACTCCTAGCCTTTAAATCTCATATCACTTTTGATCCTCAACACATCTTGGCCAATAATTGGTCTACCTCTTCTTCTATATGCAATTGGTTTGGGGTAACTTGTGATTCCAACAATGGAAGGGTCATAGGTATAACTCTCACAAACATGAATCTAAATGGCACCCTTCCACCTCACTTAGGGAACTTAACTTTTCTTGTTGATCTTGATCTTCACAACAATAGCTTTTATGGAATTCTACCAAAAGAGTTGGCCTTGTTACCTAGATTGAAGATGGTAAACTTGTGTACCAACAAATTTGGTGGTGAATTTCCAACATGGATGGGGGAGTTATCTAAACTCCAAAACTTGAGTCTTTGCAATAACAGTTTTTCAGGTTCAATTCCTTCATTCCTATCCAATTTGTCACAGCTTGAGACTTTGGATTTGAGCTTTAATTTCTTACATGGGAACATTCCACCTGAGCTTGGAAGGCTTCAAAACTTGACGGTTTTGGATTTGGCACACAATCAATTATCCAATAACATTCCTTCTTCAATCTTCAATATCTCCACATTGCAAGTGATCAATTTTGAGTACAATTCCTTATCAGGAAGTATCCCTCAAAATGTTGGTGATCTACCACAACTAAGAAGTATAAATTTGAGCAAAAATAACCTTTCAGGCTCCATACCATGGTCCATGTTTAATTTGTCTATGCTTCAAGAGATTCAATTCATTTACAATAACATATCTGGCACTTTACCATCGGATTTGTGTCATGGGGTTCCAATGCTTGAGAAGCTTGATCTCTCTGGGAATACATTTTCTGGTCAAATTCCATCAAGTTTGCATCAATGTAAAAAGCTCAAATATCTAAAGATGATCAGCAATAGATTTTATGGTCAACTACCAAGTCAAATTGGGAGATTATCTATGCTTCAGGAGTTAGATCTCAGCAACAACAATCTATCAGGTTCACTTCCACCATCTCTTTTCAACATATCTTCTTTAAGACTAATAAATCTTCGGAACAACATGTTTGGTGGTCAACTTCCAGAAGAAATGTGCCAGCAGGCTCACTCACTTCAACAGATTTCTATATTAAACAACAAAGTTGGAGGAACCATTCCAAGGTCCATTAGCAACTGCACTTCATTGAAGCGCTTATTCTTAGGAGTAAACTTTTTTACAGGTACCATACCTCATGAGATTGGTGACTACTTAAAAAACCTTGAGCAATTGCATTTGCAAGGTAATAGACTAAGAGGGTCTATTCCTTCAAACATCTTCAACATCTCAGGGTTGAAAAGCTTGTCACTATCAAATAACCAACTCTCAGGCAATCTTCCAATTTATGCACATCATAACCTTTCAAGCCTCCAATTCTTGTACCTTTCAGCCAATAATCTTAGTGGAGAAATTCCAAGTAGCCTTTTCAATGCTTCAATGCTTCTTGAATTGGTCCTTGCCAACAATACATTCACAGGAGTTATACCTGACTCAATTGGGAATTTGAGAAACCTTCAGCTTCTTTATCTGATTGGTAACAAGTTGACTAGTGATCCATCTTCTCCAGAGATTAGTTTCCTCACTTCATTGACAAAGTGTAGACAATTGGAGAAAATTCTGATATCAATGAATCCTCTTAATGGAACACTTCCAAATTCTATTGGAAATCTCTCCAACTCTCTTCAAACATTTAATGCTTGGAGTTGTGATGTCAAGGGTGAAATTCCTTCACAAATTGGGAATTTAAAGAGCTTGTATGACATAAACCTGAATGATAATCAACTTATTGGACAGGTTCCTAGTACAATTGCAACTTTGCCTCTTCTCCAACGTTTGGATCTTTCAAAGAACAGACTAAATGGCTCAATCCCAAGTCAGATTTGTCAATTAAAAAATTTGAATGAGTTTAGGCTTAGCAAAAATCAGATTTCTGGTTCAGTGCCAAGATGCATAGGGAATCTTACTTCTCTAAGAAATCTTTATTTGGATTCTAATAACCTCAACTCTTCAATACCTTCTTCCTTTTGGAGCCTCACTGATATCTTGGAGGTGAACTTATCCTCTAATGGTTTTGGTGGGTCTTTGCCAAATGAGATAAGTGGCATGAATGCAGTGATAAAATTGGACATATCAAAGAATCACCTTTCAGGAGAACTTCCAAATGGGATTGGATCCTTGCAAAAGATAATGAACCTTTCATTAGCAAATAATATGTTACAAGGGCCTATTCCTGATTCAGTTGGAAATATGCTAAGCTTGGAAGTTTTGGACCTTTCTCATAATCTTTTATCAGGAACCATCCCAAAGTCAATTGAGAAACTTTTTTATCTCAAATTTATCAACTTGTCTTATAATAAACTACAAGGAGAAATCCCTTCTGGTGGAAATTTTGCAAACTTCACAGCTCAATCATTCATGATGAATGATGCACTTTGTGGAAGACCTGAGCTAGGAGTCCAATCATGTCCCATTAATGGTACAAAACAGAGAAAAACAGGGAAAAAGCTTCTATTGAAATTGATCATACCCTTGATTATTGTGTCTTGCATCTTTGTTGGATGTGCAATTCTTCTAATATACAAGAGAAAATACAATAAATCAAGTTCAATTGATGATATAAACTTACCAACATTGCAATTTCCAAGTAGAATTTCCTACCATGAACTTGTTGAGGCAACAAAAAATTTTGATGAGCATAATCTTCTTGGTAGAGGGAGTTTTGGTTCTGTGTACAAAGGTGAGCTTTCTTCAAATGCAATGGTGATTGCAGTTAAAGTATTCAATTTGGAAGTGCAAGAAGGGTCAAGGAGTTTTGATATGGAATGTGAAGCAATGCGCAATCTTCGCCATCGCAATCTAGTTAAAGTCATTACTAGTTGTTCTAATGCTGTTGATTTCAAAGCCATAGTAATGGAATTTGTGTCAAATGGGAACTTAGAGAAGTGGTTGTATTCTCATAACTATTTCCTGAGTTTTTTACAACGGTTGAATATAGCAATAGATATTGCATCTGCCTTGGAGTATCTCCATCATGGTAACTCAAAACCTGTGGTACACTGTGACTTGAAGCCAAGTAATGTTTTGTTGGATGAAAATATGGTAGCTCATGTTTGTGATTTTGGCATATCTAAACTCTTGGAAGAAGAGCAATCTCAAATTCATACCAACACTTTGGCAACTCTTGGTTATATTGCACCAGAATATGGATCCAAAGGTGTTGTGTCCATAAAAGGAGATGTATACAGCTATGGTATTATGCTTATGGAAGTATTTACAAGAAAGAAGCCAACTGATGAAATGTTTGTAGAGGGATTAAGTTTAAGGTCATGGATCCAAGATTCAATGCCACATGAGATCATTCAAGTTATAGACCATAATCTATTGGACGGAGAGGAACAATTGATTTATGCTATGGAAGCAGCTTTGTCAAATATCATGATGTTGGCTTTAAATTGCTCTGCTGACACCCCTGATGAGAGAATGAGTATGGAGGAAGTCTTAAGTCGCTTAAACAAAATCAAAATTATATTTTTACAAATGATAGAAGGAAATTTAAGTTAA 3660 0.362 MEKTWFIFTFFFSINFIASSSDTISNTNLTTHVDQSALLAFKSHITFDPQHILANNWSTSSSICNWFGVTCDSNNGRVIGITLTNMNLNGTLPPHLGNLTFLVDLDLHNNSFYGILPKELALLPRLKMVNLCTNKFGGEFPTWMGELSKLQNLSLCNNSFSGSIPSFLSNLSQLETLDLSFNFLHGNIPPELGRLQNLTVLDLAHNQLSNNIPSSIFNISTLQVINFEYNSLSGSIPQNVGDLPQLRSINLSKNNLSGSIPWSMFNLSMLQEIQFIYNNISGTLPSDLCHGVPMLEKLDLSGNTFSGQIPSSLHQCKKLKYLKMISNRFYGQLPSQIGRLSMLQELDLSNNNLSGSLPPSLFNISSLRLINLRNNMFGGQLPEEMCQQAHSLQQISILNNKVGGTIPRSISNCTSLKRLFLGVNFFTGTIPHEIGDYLKNLEQLHLQGNRLRGSIPSNIFNISGLKSLSLSNNQLSGNLPIYAHHNLSSLQFLYLSANNLSGEIPSSLFNASMLLELVLANNTFTGVIPDSIGNLRNLQLLYLIGNKLTSDPSSPEISFLTSLTKCRQLEKILISMNPLNGTLPNSIGNLSNSLQTFNAWSCDVKGEIPSQIGNLKSLYDINLNDNQLIGQVPSTIATLPLLQRLDLSKNRLNGSIPSQICQLKNLNEFRLSKNQISGSVPRCIGNLTSLRNLYLDSNNLNSSIPSSFWSLTDILEVNLSSNGFGGSLPNEISGMNAVIKLDISKNHLSGELPNGIGSLQKIMNLSLANNMLQGPIPDSVGNMLSLEVLDLSHNLLSGTIPKSIEKLFYLKFINLSYNKLQGEIPSGGNFANFTAQSFMMNDALCGRPELGVQSCPINGTKQRKTGKKLLLKLIIPLIIVSCIFVGCAILLIYKRKYNKSSSIDDINLPTLQFPSRISYHELVEATKNFDEHNLLGRGSFGSVYKGELSSNAMVIAVKVFNLEVQEGSRSFDMECEAMRNLRHRNLVKVITSCSNAVDFKAIVMEFVSNGNLEKWLYSHNYFLSFLQRLNIAIDIASALEYLHHGNSKPVVHCDLKPSNVLLDENMVAHVCDFGISKLLEEEQSQIHTNTLATLGYIAPEYGSKGVVSIKGDVYSYGIMLMEVFTRKKPTDEMFVEGLSLRSWIQDSMPHEIIQVIDHNLLDGEEQLIYAMEAALSNIMMLALNCSADTPDERMSMEEVLSRLNKIKIIFLQMIEGNLS. 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06453 1219 SUPERFAMILY RNI-like 485 826 - -
Seca9g06453 1219 ProSiteProfiles Leucine-rich repeat profile. 342 364 IPR001611 GO:0005515
Seca9g06453 1219 ProSiteProfiles Leucine-rich repeat profile. 197 219 IPR001611 GO:0005515
Seca9g06453 1219 ProSitePatterns Protein kinases ATP-binding region signature. 935 958 IPR017441 GO:0005524
Seca9g06453 1219 Gene3D Transferase(Phosphotransferase) domain 1 1007 1212 - -
Seca9g06453 1219 Coils Coil 1211 1219 - -
Seca9g06453 1219 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1007 1215 - -
Seca9g06453 1219 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 284 - -
Seca9g06453 1219 SUPERFAMILY Protein kinase-like (PK-like) 909 1209 IPR011009 -
Seca9g06453 1219 FunFam Serine-threonine protein kinase plant-type 910 1006 - -
Seca9g06453 1219 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1050 1062 IPR008271 GO:0004672|GO:0006468
Seca9g06453 1219 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 190 - -
Seca9g06453 1219 Gene3D Phosphorylase Kinase; domain 1 915 1006 - -
Seca9g06453 1219 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Seca9g06453 1219 FunFam Inactive leucine-rich repeat receptor-like protein kinase 564 857 - -
Seca9g06453 1219 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Seca9g06453 1219 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 486 1205 - -
Seca9g06453 1219 SUPERFAMILY L domain-like 33 290 - -
Seca9g06453 1219 Pfam Leucine Rich Repeat 343 361 IPR001611 GO:0005515
Seca9g06453 1219 SMART LRR_typ_2 243 267 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 535 560 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 487 511 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 340 364 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 292 316 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 99 122 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 195 219 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 639 663 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 438 462 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 687 711 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 171 194 IPR003591 -
Seca9g06453 1219 SMART LRR_typ_2 783 807 IPR003591 -
Seca9g06453 1219 SUPERFAMILY RNI-like 201 549 - -
Seca9g06453 1219 PRINTS Leucine-rich repeat signature 343 356 - -
Seca9g06453 1219 PRINTS Leucine-rich repeat signature 783 796 - -
Seca9g06453 1219 Pfam Protein tyrosine and serine/threonine kinase 933 1203 IPR001245 GO:0004672|GO:0006468
Seca9g06453 1219 Gene3D Ribonuclease Inhibitor 483 555 IPR032675 -
Seca9g06453 1219 Gene3D Ribonuclease Inhibitor 187 239 IPR032675 -
Seca9g06453 1219 Gene3D Ribonuclease Inhibitor 240 481 IPR032675 -
Seca9g06453 1219 Gene3D Ribonuclease Inhibitor 556 864 IPR032675 -
Seca9g06453 1219 ProSiteProfiles Protein kinase domain profile. 929 1211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06453 1219 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Seca9g06453 1219 Pfam Leucine rich repeat 440 500 IPR001611 GO:0005515
Seca9g06453 1219 Pfam Leucine rich repeat 761 820 IPR001611 GO:0005515
Seca9g06453 1219 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 314 563 - -
Seca9g06453 1219 SMART serkin_6 929 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06453 1219 SMART LRR_sd22_2 438 464 - -
Seca9g06453 1219 SMART LRR_sd22_2 783 806 - -
Seca9g06453 1219 SMART LRR_sd22_2 195 221 - -
Seca9g06453 1219 SMART LRR_sd22_2 340 366 - -
Seca9g06453 1219 SMART LRR_sd22_2 171 186 - -
Seca9g06453 1219 SMART LRR_sd22_2 663 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06453 Seca-Chr9 182312142 182322784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06453 1 1207 Receptor kinase-like Gene Family AT5G46330 33.872 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca9g06453 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06453 - K13420 lja:Lj6g3v0938090.1 1214.13