Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06434 ATGTCCTCACGAACCACCGCGACGGAGGCGCCGGAGCCTCACGCGCCGCTCCTCCGCTCGCGCCACGACGGCGGGGGTCGGGCTCCTGCCCTTGCGCTCCTGCTCGGACGCGCCGCTGGCCGCCGCGCCCCGTCGATGCTGGTGCGTGAGACGGCGGCGCGTGAGCTCGAGGAGCGGCGCGCCGACTGGGGATACTCGAAGCCTGTGGTGGCGCTCGACATGTCGTGGAATATGGCCTTCGTGGTGGTCTCGGTGGCGATGCTGGCGTGCACCATCGACGAGCGCCCGAACACACCGATCCGGGTCTGGATCGTCGGCTACGCGCTGCAGTGCCTTGTGCACGTGGTGCTGGTGTGGCTCGAGTATCGGCGACGGTACCGGAGGGATTTGCGGCGGCGGAGGGAGAGCGAGACCGGAAGTGCAGACGGAAGCGACAGCGACGACGGCGACGGGAACTCGTCTCGGTCCCAAAACAGATTCACTAAACGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATGTACTTCTGCAAGATGCCCCGCGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTTTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTAGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTATACTACCAAAATACAGATTTCAAATATTAAGCAATCCGGAAAAGGCTAGTGGCGGAGCTGGATCAATGGTTCCCATAGAAACTACCAGTTGTTACTTGGCAAATGAAAGAATACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTTCATATGAGGATGGAGTAGAGCTCCATGCTCTTCCCTGCAACCATCATTTCCATGCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAACGAACAGGTATAG 1050 0.5467 MSSRTTATEAPEPHAPLLRSRHDGGGRAPALALLLGRAAGRRAPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSVAMLACTIDERPNTPIRVWIVGYALQCLVHVVLVWLEYRRRYRRDLRRRRESETGSADGSDSDDGDGNSSRSQNRFTKRCESINTGVSFLWWMVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQILSNPEKASGGAGSMVPIETTSCYLANERILLPEDAECCICLCSYEDGVELHALPCNHHFHASCIVKWLKMNATCPLCKYNILKGNEQV. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06434 349 SUPERFAMILY RING/U-box 286 343 - -
Seca9g06434 349 CDD RING-H2_PA-TM-RING 297 339 - -
Seca9g06434 349 SMART ring_2 298 338 IPR001841 -
Seca9g06434 349 PANTHER TARGET OF ERK KINASE MPK-1 38 347 - -
Seca9g06434 349 FunFam E3 ubiquitin protein ligase RIE1 278 346 - -
Seca9g06434 349 Pfam Ring finger domain 297 339 IPR001841 -
Seca9g06434 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 347 IPR013083 -
Seca9g06434 349 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Seca9g06434 349 MobiDBLite consensus disorder prediction 137 157 - -
Seca9g06434 349 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06434 Seca-Chr9 181995503 182000471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06434 6 348 C3H Transcription Factor Family AT1G68070 68.103 1.61e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06434 - K13148 aip:107643865 520.005