Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06433 ATGGCTCCGAACCTGGAATGTCGTATGTACGAGACGAAGTACCCGGAGGTGGACATGGCGGTGATGATACAGGTGAAGAACATAGCGGATATGGGTGCTTACGTTTCACTCCTTGAGTACAACAACATCGAGGGCATGATTTTGTTCTCTGAGCTCTCACGCCGTCGAATTCGTAGCGTTAGCAGCCTCATCAAAGTGGGTCGCATCGAGCCTGTTATGGTCCTTCGTGTTGACAAGGAAAAGGGTTACATTGATCTCAGCAAGCGAAGGGTCTCTGAAGAAGACATCCAAGCCTGCGAAGAGAGGTATAACAAGAGCAAACTCGTTCACTCCATCATGCGTCACGTTGCTGAAACCTTGGATATTGATTTGGAGGTAGAGCTGTATGTTCATATTGGATGGCCTTTATATCGCAAATATGGTCACGCTTTTGAGGCATTCAAAATAATTGTGACTGATCCTGATTCAGTTTTGGATGCTCTCACCCGTGAGGTCAAGGAAGCTGGCCCTGATGGGCAAGAGGTGACCAAGGTGGTGCCAGCTGTATCTGAAGAAGTGAAGGATGCTCTTGTGAAGAATATTAGAAGACGAATGACACCCCAACCCTTGAAAATTAGAGCGGATATTGAAATGAGATGTTTTCAATTTGATGGAGTTATTCACATTAAGGAGGCAATGCGGAAGGCTGAAGCTGCTGGAAATGATGATTGCCCTGTGAAAATTAAACTTGTTGCTCCTCCACTTTACGTTCTTACCACACAGACCCTTGACAAGGAGCAAGGAATATTGGTTCTCAACAATGCCATTGCTTCTTGCACTGAATCAATAGAACAACACAAGGGTAAACTTGTAGTGAAGGAGGCACCCAGAGCAGTGAGTGAACGTGACGATAAATTGCTTGCTGAGCACATGGCTAAGCTACGCCAAGATAATGAGGAGGTTAGCGGTGATGAAGACAGTGAGGAGGAAGAAGATACAGGAATGGGCGAGGTTGATGTGGAGAACAATGGTTCTGGGATAATGGAGTGA 1029 0.4597 MAPNLECRMYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLDIDLEVELYVHIGWPLYRKYGHAFEAFKIIVTDPDSVLDALTREVKEAGPDGQEVTKVVPAVSEEVKDALVKNIRRRMTPQPLKIRADIEMRCFQFDGVIHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIASCTESIEQHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGEVDVENNGSGIME. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06433 342 Gene3D EIF_2_alpha 203 325 IPR024055 -
Seca9g06433 342 SUPERFAMILY Nucleic acid-binding proteins 7 89 IPR012340 -
Seca9g06433 342 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Seca9g06433 342 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Seca9g06433 342 Pfam Eukaryotic translation initiation factor 2 alpha subunit 128 258 IPR011488 GO:0003723|GO:0003743
Seca9g06433 342 SMART S1_6 16 89 IPR022967 -
Seca9g06433 342 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 331 IPR011488 GO:0003723|GO:0003743
Seca9g06433 342 Coils Coil 304 324 - -
Seca9g06433 342 Gene3D - 3 91 IPR012340 -
Seca9g06433 342 FunFam Eukaryotic translation initiation factor 2 subunit alpha 92 197 - -
Seca9g06433 342 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Seca9g06433 342 SUPERFAMILY eIF2alpha middle domain-like 91 197 IPR024054 -
Seca9g06433 342 FunFam Eukaryotic translation initiation factor 2 subunit alpha 4 91 - -
Seca9g06433 342 SUPERFAMILY eIF-2-alpha, C-terminal domain 201 317 IPR024055 -
Seca9g06433 342 MobiDBLite consensus disorder prediction 303 342 - -
Seca9g06433 342 FunFam Eukaryotic translation initiation factor 2 subunit 1 203 325 - -
Seca9g06433 342 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 196 IPR024054 -
Seca9g06433 342 MobiDBLite consensus disorder prediction 314 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06433 Seca-Chr9 181972688 181976076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06433 2 342 Eukaryotic Initiation Factors Gene Family AT5G05470 81.579 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06433 K03237 - gmx:100805950 602.053