Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06428 ATGAGCAAGAACTGGAAATTCAGCCGCTTCAGGGATCTTCGTGGAGTTCTGTGCCTTCTAGCGTTGTGTTTGTTCTTTCAGAGCTTTGGTTTGTGCTCCTCTCTTAACGAAGAAGGTAAAGCTCTTTTGAAGTTGAAGCAGCGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTTGATGATGAAGTAGCGGTTGACCCGTGTAATTGGTTTGGAGTTGAGTGTTCAGATGGAAAAGTGGTTGTCTTGAATTTGAAAGACCTCTGTCTTGAAGGAAATCTGGCACCTGAGCTTGTGAACCTTGTTCACATAAAGTCTATAATTTTGCGGAATAATTCTTTTCAAGGGATCATCCCTGAAGGAATTGTACACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTAAGTGGACCTCTTCCTAAAGATCTTGGGAGGAATATATCGCTGACAATCCTTTTGCTTGACAACAATGATCTTCTTTGTGGTTTCTCTCCTGAGATTAATGAATTGAAGATGCTTTCTGAATCTCAAGTAGATGAAAACCAGCTGATTAGTGCAGAAAAAATGCCACGTCGTATGGGAAGATCCACCACGCGGCATGTTGGCCAAAATAAGAAAGGTCTTCGGAGGCTACTGCAAACTCTTAATCGTACTCGTGAAGATCCTTTAAATCGTGAAGCTAAGCTCCCAGATATTACAGCTCCATCTCCGTCCCCTTCCCCATCTGCCTCAGCAAGACCTCCAACAGTGACGAAGCCTCCATCCCCTGATCGAAATAATTCTGCCTCTCCTTCTCCCCTGCCTTCACCAGGCTCTACAACACAACCTAAAAGTAACTCATCAAAGAAACATCAAGTTTTGGCTGGAGTTGCGGGTGGTGCTGTATTTCTTCTCATTTCAATCATTGGCATATATCTTTATAGAACCAACAAGGTTTCTACTGTAAAACCATGGGCCACGGGATTAAGCGGACAGCTTCAGAAGGCATTTGTGACAGGTGTTCCAAAGCTAAAGAGATCAGAACTTGAAGCAGCATGTGAAGATTTTAGTAATGTTATTGGTACTACACCCATTGGGACAGTGTACAAAGGAACTTTATCTAATGGAGTTGAAATAGCTGTGGCCTCTGTTGCGGTGACATCATCCAAAGATTGGTCAAAGACTTCAGAAGCCCAGTTTCGGACGAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGGTATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTTGTTTTTGAATATGCCCCAAACGGAACACTCTTTGAGCATTTACACATTGGAATTCCAGTAAAAGAAGCCGAGCACTTGGATTGGGGAACAAGACTTAGAATTGCCATGGGCATGGCTTACTGCCTGCAACATATGCACCAATTGGACCCTCCTTTGGCCCATAGCAACCTGAATTCTTCATCTGTCCAACTCACTGATGATTATGCTGCCAAAATTTCAGATTTGGGTTTTTGGAATGAAATAGCTTCATCTGAGATAGTAAAAGCTGCTGCTAGAAAACACACTGACATGACATTAGCAAGTAACATTTACTGCTTTGGTGTTATATTATTTGAAATGGTAACAGGCCGTCTCCCTTATTCAGTGGATAACAATGGCTCACTCGAAGATTGGGCTTCACACTATTTACAAGGGGACAAGCCCCTCAAAGAAATGGTGGATCCAACTCTAGCATCCTTCCAAGAAGAACAGCTAGAACAAGTTGCTCCTTTGATTCAATCTTGTGTCCACCCTGATCAAGAGAAGAGACCAACAATGAAAGAAATTTGTGAGAGATTAAGAGAGATAACAAAATTAAGTCCTGAAGCAGCTGTTCCAAAACTTTCTCCTCTTTGGTGGGCAGAGCTTGAGATTTCTTCTGTAGATGCAAGCTGA 1944 0.4208 MSKNWKFSRFRDLRGVLCLLALCLFFQSFGLCSSLNEEGKALLKLKQRIVSDPFGALSNWVDDEVAVDPCNWFGVECSDGKVVVLNLKDLCLEGNLAPELVNLVHIKSIILRNNSFQGIIPEGIVHLNELEVLDLGYNNLSGPLPKDLGRNISLTILLLDNNDLLCGFSPEINELKMLSESQVDENQLISAEKMPRRMGRSTTRHVGQNKKGLRRLLQTLNRTREDPLNREAKLPDITAPSPSPSPSASARPPTVTKPPSPDRNNSASPSPLPSPGSTTQPKSNSSKKHQVLAGVAGGAVFLLISIIGIYLYRTNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTTPIGTVYKGTLSNGVEIAVASVAVTSSKDWSKTSEAQFRTKIDTLSKVNHKNFVNLLGYCEEDEPFTRMVVFEYAPNGTLFEHLHIGIPVKEAEHLDWGTRLRIAMGMAYCLQHMHQLDPPLAHSNLNSSSVQLTDDYAAKISDLGFWNEIASSEIVKAAARKHTDMTLASNIYCFGVILFEMVTGRLPYSVDNNGSLEDWASHYLQGDKPLKEMVDPTLASFQEEQLEQVAPLIQSCVHPDQEKRPTMKEICERLREITKLSPEAAVPKLSPLWWAELEISSVDAS. 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06428 647 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Seca9g06428 647 MobiDBLite consensus disorder prediction 239 268 - -
Seca9g06428 647 PANTHER PROTEIN MALE DISCOVERER 2 16 644 - -
Seca9g06428 647 MobiDBLite consensus disorder prediction 218 232 - -
Seca9g06428 647 MobiDBLite consensus disorder prediction 191 289 - -
Seca9g06428 647 Gene3D Transferase(Phosphotransferase) domain 1 435 628 - -
Seca9g06428 647 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Seca9g06428 647 Gene3D Ribonuclease Inhibitor 34 230 IPR032675 -
Seca9g06428 647 Pfam Protein tyrosine and serine/threonine kinase 355 616 IPR001245 GO:0004672|GO:0006468
Seca9g06428 647 FunFam Nuclear pore complex protein NUP107 35 193 - -
Seca9g06428 647 SUPERFAMILY L domain-like 38 191 - -
Seca9g06428 647 FunFam Inactive receptor-like serine/threonine-protein kinase 326 434 - -
Seca9g06428 647 Gene3D Phosphorylase Kinase; domain 1 324 434 - -
Seca9g06428 647 ProSiteProfiles Protein kinase domain profile. 352 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06428 647 SUPERFAMILY Protein kinase-like (PK-like) 335 616 IPR011009 -
Seca9g06428 647 MobiDBLite consensus disorder prediction 269 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06428 Seca-Chr9 181915701 181920179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06428 14 616 Receptor kinase-like Gene Family AT5G16000 26.307 2.18e-49 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca9g06428 PK_Tyr_Ser-Thr 7.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06428 - - gmx:100784541 977.237