Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06423 ATGGCTGCGTCGCTGCAGAAAGTGGCGCATTCGAATACTAACGCCGGTAGCTACGGCGACACCTGCAAGGGTGCTGCCGCTGCCGCTGCCGTCTCCGCTGAATTCCCGGTCGGTCTTAGGGTTCTCGTCGTCGATGATGACGAGACCACCTTGAAGATTATCGAGCGAATGTCTATTCGCTGCCATTACCGCGTTACCACATGCACTGGGGCTACTGTTGCTTTGAATATTCTGCGGGAGAGGAAAGGCTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATCATGATGTCTGCTGACGGTAGAACAAGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTAATTAAACCTGTGCGTGAGGAAGAACTAAGGAATATATGGCAGCATGTTGTTAGGAAAAATTGGAATGTAAATAAAGAACATGAAAATTCTGGCAGTATGGAAGATAATGATCGGAATAAACGGGGGAATGATGATACTGAGCATACTTCTTCTGCTGTTGATGCAACAGAAGGAATAGCTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGAAGATGCTGAATTAGAGAATGATGATCCAGCTACATCCAAGAAGCCCCGTGTAGTGTGGTCAGTGGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTAGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTGCCTGGTTTGACACGAGAAAATGTTGCAAGTCATTTGCAGAAATTCAGACTTTATCTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGTTAAACACAGTTCCTGGGAATATAGAATCTAAGCTGGGTGCTACTGGAAGATTCGACATACAAACATTGGCTGCTTCTGGCCATGTTCCCCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCGCCCAGTAACTAACATAATGCCGACAGTGGACCAGACTACCCTACTGCAAGCATCCATACAGGGACCAAAAAATTCTCATGCTGATGATCATGCTGTAGCATATGGTCAGCCTCTTGTAAAAGGTCCTTCCAACATTGCCAAAAATTTCCCTCAGTCCATCTTGACTGCCAATAATACATCTTCAGGACATGGAGCATGGCCATCATCTAATACCATTAGTTCAGTGGGAACTAATAGTAATGTTGGAAGGTTGGGTGTTCAGAATAATAACACACTGATGGATATATTGCAGCACCAACAGAACCAGCAAAAACAACAGCAACAGCTACAGCTACAGCTGCAGCAGCAGCAGCAGTCACTGCTGATGCATGATCAAACTCGTACGATCAATGTTCAACCATCTTGCTTGGTTGTTCCCTCCCAAGCTTCTGACACTTTGCAGGCGGTAAATAGTCTTGCTTCTACCAACCAGGATCGCAGTTATGTCAGGAGTACCGTTATTGATTATAGTCTATTGCCACAAAAATCAAGTAATTCCTTGAGTGTATCTCAATCTCAATTTCCTGTTGGGGACACCAAAAATAGAGGCGGTCTCTGTGGGTATACTACACCCTCCATTTCTCCTCAAACGTCCTCTTGTTCAATAGGTTCCCCTAACAGCAACATTCAGCAGCTTCAGAACACAGCTATGACATTTGGTGCTGCAAGATCTTTGCCTGGACTCATGACTGATAGACAAGTTCCCTATGGTATTAAATCTGCTGATTCACTTGATCAAGTATGTCCCAGGAATCTTGGATTTGTTGACAAAGATACCTGCATTCCAAGTAGGTTTATGGAAAATGAAATTGAATCATCTGTAAGTGATTTTAGTCAAATGAAAGTATCCACAGATAGCAATGGTATCGCACTGATGGAGGAGCCAAATTTTAAAAATAATTCAAAAGTGATCCACCCTGTCCTACAAAGATATTCATCTCATGATCGTTCAAGTGGGTTCACTGAATAG 2019 0.4359 MAASLQKVAHSNTNAGSYGDTCKGAAAAAAVSAEFPVGLRVLVVDDDETTLKIIERMSIRCHYRVTTCTGATVALNILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKNWNVNKEHENSGSMEDNDRNKRGNDDTEHTSSAVDATEGIAKAPKKRSSLKEEEDAELENDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNTVPGNIESKLGATGRFDIQTLAASGHVPPETLAALHAELLGRPVTNIMPTVDQTTLLQASIQGPKNSHADDHAVAYGQPLVKGPSNIAKNFPQSILTANNTSSGHGAWPSSNTISSVGTNSNVGRLGVQNNNTLMDILQHQQNQQKQQQQLQLQLQQQQQSLLMHDQTRTINVQPSCLVVPSQASDTLQAVNSLASTNQDRSYVRSTVIDYSLLPQKSSNSLSVSQSQFPVGDTKNRGGLCGYTTPSISPQTSSCSIGSPNSNIQQLQNTAMTFGAARSLPGLMTDRQVPYGIKSADSLDQVCPRNLGFVDKDTCIPSRFMENEIESSVSDFSQMKVSTDSNGIALMEEPNFKNNSKVIHPVLQRYSSHDRSSGFTE. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06423 672 Gene3D - 39 176 - -
Seca9g06423 672 SUPERFAMILY CheY-like 38 162 IPR011006 -
Seca9g06423 672 Gene3D - 221 284 - -
Seca9g06423 672 Pfam Myb-like DNA-binding domain 227 275 IPR001005 -
Seca9g06423 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 39 437 IPR045279 GO:0009736
Seca9g06423 672 FunFam Two-component response regulator 39 176 - -
Seca9g06423 672 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
Seca9g06423 672 MobiDBLite consensus disorder prediction 162 189 - -
Seca9g06423 672 MobiDBLite consensus disorder prediction 197 211 - -
Seca9g06423 672 FunFam Two-component response regulator 221 284 - -
Seca9g06423 672 MobiDBLite consensus disorder prediction 397 421 - -
Seca9g06423 672 MobiDBLite consensus disorder prediction 162 223 - -
Seca9g06423 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 281 IPR017930 -
Seca9g06423 672 PIRSF RR_ARR_type-B 12 632 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca9g06423 672 Coils Coil 436 456 - -
Seca9g06423 672 ProSiteProfiles Response regulatory domain profile. 40 155 IPR001789 GO:0000160
Seca9g06423 672 NCBIfam myb-like DNA-binding domain, SHAQKYF class 225 278 IPR006447 GO:0003677
Seca9g06423 672 CDD REC_typeB_ARR-like 41 155 - -
Seca9g06423 672 SMART REC_2 39 151 IPR001789 GO:0000160
Seca9g06423 672 Pfam Response regulator receiver domain 41 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06423 Seca-Chr9 181778368 181783643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06423 73 338 Response Regulator Gene Family AT3G16857 54.196 9.70e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca9g06423 Response_reg 4.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06423 - K14491 gmx:100817125 915.99