Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06419 ATGCTAGCAATTGACATCAATCTTTTTCATCTTGTTGATTCTCAACAAATAAAGATTGATTATATAGAAAGTGCCCTGCATAAGCTATATCAGATGAAGGAATGCTGCTATGAACCTGTCCAATGGTTGGAGAAACAATATCAAAGATACTCAACAAATAGTTTACTACCACTATCTAGTACCATTTCTTTAGATGAAGGGTTGGTTTATGTGCATAGAGTGCAAGTAACTCCTTCCAAAATTTACTTTTGTGGTCCTGAAGTGAATCTTTCCAATCGTGTCCTACGCAACTATCCTGAAGACATTGATAACTTCCTTCGCGTTTCTTTTGTTGATGAAGACATGGATAGACTTCATTCAGCAGATTTGATCCAACCTTCATCTACTGCTGATCTGGAAAGAGAAACAAAAATCCATCAGAGGGTGTTTTCTACACTGAAAAATGGCATAGAAATTGGTGATAAGAGATTTGAGTTTCTTGCTTTCTCATCAAGTCAACTAAGAGATAACTCTGTGTGGATGTTTGCATCAAGAATTGGACTTACTGCATCTGATATAAGAAAGTGGATGGGAGATTTTCATGAGATTAGGAATGTGGCCAAATATGCAGCAAGGTTGGGTCAATCATTCAGCTCTTCAAGGGAAACAGTGAGTGTTGGAAGACATGAAATTGAAGTTATTCCTGACATAGAATTGAGGAGAGGTGAAGTTAAATATTGTTTCTCTGATGGCATTGGGAAGATATCTGCTGAATTGGCTCAAGAAGTTGCCAAGAGATGTGGTTGTAAGGATCATATTCCTTCTGCATTTCAAATCAGATATGGTGGTTACAAAGGTGTTGTTGCTATTGATCCAACTTCATCAACTAAACTGTCCTTAAGAAAAAGCATGTGCAAGTACAAGTCAGAAAACACAAAATTAGATGTTCTGGCATGGAGCAAACCCAAACCTTGTTTCCTTAATCGTCAAGTAATCATCCTCTTATCCACACTCGGGGTCAAAGATCGAGTCTTTAGAAGGAAACAAAGGGAGATTGTCAATCAACTGAAAATGGTATCAAGAAAGCCATTCAAGGCAGTGGACATGATGTCCCCAGGAGAGATTACAAACATGTTAAGGGAAATGCTCATTTGTGGCTTTCATCCAACAAAGGAACCTTTTCTTTCCATGATGTTGCAAACACTATGTGCATCAAAATTACAAGAGTTACAGCTCAAAACTAGGATATTTGTTAAGAAAGGAAGGGCAATGTTAGGATGCTTAGATGAAACTAGGAAATTAAATTATGGTGAGGTATTTGTGCAGATATCTCTCCCAAGAAATAAGCAATTAAATTTGAAGTCCTCTTGTTCTTCTTATGGCAATGGAGCAAACAAAAGTAAGTATATTGTTAAGGGAAAGGTTGTTGTAGCTAAAAATCCATGTCTGCACCCAGGAGATGTGCGGATTTTGAGAGCAGTGGATGTACCTTCCCTGCATCATATGGTAGACTGTGTTGTTTTTCCACAGAAGGGGAGAAGACCACATCCTAATGAATGTTCTGGAAGTGACTTGGATGGAGATATCTACTTTGTCAGCTGGGACCCTGGTCTTATTCCTCCTCGTCAGGAAAATCCCATGGATCATGCACCATCTCAAGTTATGAATGTGGATCATGATGTTACATTACAGGATGTTGAGGAACATTTCACCCATTACATTGTTAAAGACAGCTTAGGAATTGTTGCAAGTGCACACACAGTCTTTGCTGATAGGGATCCTGAAAAGGCAATGAGCCCTTCATGTATTGAGCTTGCAAAGCTACACTCAGTTGCTGTTGATTTTGCGAAATCCGGTGTGCCAGCAGAAGTTCCACAACATCTACGTGTGGACCAGTATCCAGATTTCATGGAAAAACCAGACAAACCAAGTTATCAATCAAATAGCATAATAGGAAAGCTTTATCATGATGTGAAGAAAGTTGCACTACAAAAAAGCCTCACCAAGCCCTTCACTAGAAAAGCTGCAAGGCAATTATATGATCATGACATGGAGATTGATGGTTTTGAGAAGTACACAACTATTGCTTGTGAATACAAGCACATGTATGACTGTAAATTGGGGAACCTAATGGATTACTATGGTATAGAAACAGAAGCAGAAATAATCAGTGGCAATATCTTGAAAATGTCAAAATACTTCAATGAAAGAAAAGATTTGGAAGGAATTAATCATGCTGTGATGTCACTAAGGAAGGAAGCTAGGAGTTGGTTCAATGAGATGATAAGCAAGTCACATTCTCAAGGTGATCATGATGCCTATGCAATAGCATCTGCTTGGTATCATGTTACATATCATCCTAGCTTTTGGGGATGCTACAATGAGGGGCTAAACAGGGTTCATTTCCTCAGTTTCCCATGGTGTGTACATGACACTCTTGTCAAGATAAAGAAGGAAAAAGTCAGTCATAGAACTTACAAAAGGAAGCTTTGGACAATACTGAAAGTGGAGAGGGATGAGGTGGAAGCTCAGGATCCAACTGCCGCACGAAAAGTTCAGAAGGCGGACCGCGAGAAACTCAGGAGGGATCGACTCAATGACCATTTTCACGAGCTGGGAAACGCGTTAGATCCTGATAGACCAAGGAATGACAAGGCAACTATTCTTACTGATGCAATCCAAATGCTAAAGGACTTCACTACAGAAGTTAATAAGCTGAAAATGGAGCATAAAGCACTTTCTGAAGAGTCTCGTGAACTAATGCAAGAAAAGAATGAACTCCGAGAAGAGAAGGCATCTTTAAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTCAGAATCATGTTCCCATGGACTGCAGTTGACCATTCTGTTGTCATGAGTCCACCTTATTCATATCCAGTTCCTATACCCATCCCTCCCAGTCCAATTTCCATGCACCCATCTCTTCAACCCTTTCCTTTCTTTGGAAATCAAAATCCTGGTCACATTCCTAGTCCCTGTTCAATGTATGTCTCATTCTCAGCTCCAACTAACCCTGCAATTGAGCTGCCATCATCTCAGTATGCTTCTACGTCTCACGCGTCTAACCAGAAAGAAAGGCCTAGTGATGCTGAAAGATGTAGTGATTCTCACGATGTAGCTACAGAGCTTGAACTTAAGATGCCTGGATCATCAGCACAACAGGATTCCACTTCTGGTGGAAGGAAGTACAAGCATTCAGCAATGAAGGATAGAATCATCACAGATGGGAGTGCTTCAAGCCGGTATTCATCACCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACACTAACATCCCAAAGGTTGATAATTGA 3333 0.4002 MLAIDINLFHLVDSQQIKIDYIESALHKLYQMKECCYEPVQWLEKQYQRYSTNSLLPLSSTISLDEGLVYVHRVQVTPSKIYFCGPEVNLSNRVLRNYPEDIDNFLRVSFVDEDMDRLHSADLIQPSSTADLERETKIHQRVFSTLKNGIEIGDKRFEFLAFSSSQLRDNSVWMFASRIGLTASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEVIPDIELRRGEVKYCFSDGIGKISAELAQEVAKRCGCKDHIPSAFQIRYGGYKGVVAIDPTSSTKLSLRKSMCKYKSENTKLDVLAWSKPKPCFLNRQVIILLSTLGVKDRVFRRKQREIVNQLKMVSRKPFKAVDMMSPGEITNMLREMLICGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRKLNYGEVFVQISLPRNKQLNLKSSCSSYGNGANKSKYIVKGKVVVAKNPCLHPGDVRILRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVSWDPGLIPPRQENPMDHAPSQVMNVDHDVTLQDVEEHFTHYIVKDSLGIVASAHTVFADRDPEKAMSPSCIELAKLHSVAVDFAKSGVPAEVPQHLRVDQYPDFMEKPDKPSYQSNSIIGKLYHDVKKVALQKSLTKPFTRKAARQLYDHDMEIDGFEKYTTIACEYKHMYDCKLGNLMDYYGIETEAEIISGNILKMSKYFNERKDLEGINHAVMSLRKEARSWFNEMISKSHSQGDHDAYAIASAWYHVTYHPSFWGCYNEGLNRVHFLSFPWCVHDTLVKIKKEKVSHRTYKRKLWTILKVERDEVEAQDPTAARKVQKADREKLRRDRLNDHFHELGNALDPDRPRNDKATILTDAIQMLKDFTTEVNKLKMEHKALSEESRELMQEKNELREEKASLKSDIENLNAQYQQRVRIMFPWTAVDHSVVMSPPYSYPVPIPIPPSPISMHPSLQPFPFFGNQNPGHIPSPCSMYVSFSAPTNPAIELPSSQYASTSHASNQKERPSDAERCSDSHDVATELELKMPGSSAQQDSTSGGRKYKHSAMKDRIITDGSASSRYSSPQGLQDSSNSVGDTNIPKVDN. 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06419 1110 Coils Coil 882 937 - -
Seca9g06419 1110 MobiDBLite consensus disorder prediction 1029 1047 - -
Seca9g06419 1110 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 842 892 IPR011598 GO:0046983
Seca9g06419 1110 MobiDBLite consensus disorder prediction 1013 1110 - -
Seca9g06419 1110 MobiDBLite consensus disorder prediction 1052 1066 - -
Seca9g06419 1110 Pfam Helix-loop-helix DNA-binding domain 843 891 IPR011598 GO:0046983
Seca9g06419 1110 Gene3D - 841 943 IPR036638 GO:0046983
Seca9g06419 1110 SMART finulus 848 898 IPR011598 GO:0046983
Seca9g06419 1110 MobiDBLite consensus disorder prediction 1081 1110 - -
Seca9g06419 1110 Pfam RNA dependent RNA polymerase 76 651 IPR007855 GO:0003968
Seca9g06419 1110 CDD bHLH_AtILR3_like 847 921 - -
Seca9g06419 1110 PANTHER RNA-DEPENDENT RNA POLYMERASE 4 841 IPR007855 GO:0003968
Seca9g06419 1110 MobiDBLite consensus disorder prediction 1013 1028 - -
Seca9g06419 1110 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 841 912 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06419 Seca-Chr9 181715846 181729568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06419 823 1070 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 52.157 2.68e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g06419 RdRP 2.3e-189 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06419 K11699 - gmx:100805477 1427.54