Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06414 ATGGTGTCAAGGTCCTATTCAAATCTATTAGAGCTGGCCTCTGGTGAGGCTCCATCATTTGGGATCATGAATAGGAGAATTCCAAGGATTATGACTGTGGCTGGGTTGATATCTGATGTTGATGATGATCCAGCTGAGAGTGTGTGTTCTGATCCATCTTCTTCATCAGTACACCGTGACCGGATCATAATAGTGGCTAATCAGCTCCCTATAAGGGCTCAGAGGAAGCAAGATGGCAATAGGAATTGGTCTTTTGAGTGGGAGGAAAATTCACTTCTTCAATTGAAAGATGGATTGGGAGATGATGATATTGAAGTTATTTATGTTGGATGCCTTAAGGAAGATGTGCATCCAAATGATCAAGATGAGGTTTCACAGATACTTCTTGAGACCTACAAGTGTGTCCCAACTTTTCTCCCACCTGATCAGTTTACTAGGTACTATCATGGCTTTTGCAAACAACAATTGTGGCCACTGTTTCATTACATGCTTCCTTTGTCACCAGAACATGGTGGTAGGTTTAATAGGTCACTGTGGCAAGCTTATGTCTCAGTCAACAAAATTTTTGCAGATAGGATTATGGAAGTCATTAACCCTGAAGATGATTTTGTGTGGATACATGATTATCATTTGATGGTGTTACCAACTTTCTTGAGGAAGAGATTTAACAGAGTCAAACTTGGATTCTTCCTCCATAGTCCATTCCCCTCATCAGAAATATATAAAACATTGCCTGTTAGGGAAGAGCTCTTGAGAGCACTCCTTAATTCGGATTTGATTGGGTTCCATACCTTTGATTATGCGCGACATTTCCTCTCATGTTGTAGTCGCATGCTCGGTCTCACTTATGAATCGAAGCGAGGTTATATCGGGCTTGAGTATTATGGTAGGACTGTTAGTATCAAAATTCTTCCTATTGGTATACACATGGGTCAGCTTCAATCAGTTCTAAGGCTGCCAGAGACTGAAGATAAAGTTTGTGAGCTCATTAAACAGTTTTCTGATCAAGGCAGGACAATGCTGCTTGGGGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAGCTCCTCATTCAGAACCCTGAGTATCAGGGAAAGGTAGTACTGGTCCAGATAGCTAATCCTGCCAGGGGAAAAGGGAAAGATGTGAAAGAGGTGCAAGCTGAGACGAAGGCCACGGTGAAACGGATTAATGAAACATTTGGGAAACCTGGGTATGATCCTGTTATTCTGATTGAGGAGCCACTCAAGTTTTATGAGAGAGTTGCTTACTATGTTGTTGCCGAGTGTTGTTTAGTCACTGCTGTAAGGGATGGAATGAATCTCATACCATATGAGTATATAATCAGTCGTCAAGGAAATGAAACATTGGATAATGTTTTGGGACTAGTGTCCTCCCCTAAGAAGAAAAGCATGTTAGTTGTGTCTGAGTTCATTGGCTGTTCCCCGTCTTTAAGTGGAGCAATCAGAGTGAACCCGTGGAATATTGATGCGGTCGCAGAAGCGATGGACTCTGCCCTGGAAATGGCTGATTCAGAGAAACAGCTTAGGCATGAAAAGCATTATAGATATGTTAGTACTCATGATGTTGGGTACTGGGCTCGAAGCTTCTTACAAGATTTGGAAAGGAGTTGTAGTGATCATGTACGACGAAGGTGGTGGGGAATTGGGTTTGGATTGAGTTTTAGAGTTGTAGCACTTGATCCAAACTTTAGGAAGCTCTCAATGGAACACATTGTTTCAGCTTATAAACGGACAACAACTCGGGCAATCCTTCTTGACTATGATGGTACACTAATGCCTCAGGCTTCTATTGATAAGAGCCCGCCTAGTAAATCCATTGAAATTCTTAATACTTTGTGTAGAGATAAGAACAACATGGTGTTTCTTGTTAGTGCTAGAAGCCGAAAGGACCTCTCTGAATGGTTTTCTCCTTGTGAGAATCTGGGAGTTGCAGCTGAGCATGGTTACTTTATAAGAATGAAGCGAGATGCAGAATGGGAAACCTGTGTTCCTGCAACAGATTGTAGTTGGAAACAAATTGCAGAGCCTGTTATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGATAAGGAGACTGCACTTGTTTGGTGCTATGAGGATGCAGATCCTGATTTTGGATCATGCCAAGCTAAGGAACTTCTTGATCATCTTGAGAGTGTGCTGGCAAATGAACCTGTAACAGTCAAAAGCGGCCAGAGTAATGTAGAGGTCAAACCACAGGGTGTGAGCAAGGGACTAGTGGCCAAACGCCTACTTTCTTCCATGGAAGAAAAGGGAATGTCACCTGATTTTGTTTTGTGCATAGGAGATGACAGGTCTGATGAAGACATGTTTGAGGTAATTACCAGTTCAATGGCCGGTCCGATTGCACCAAGGGCTGAAGTATTTGCGTGCACGGTTTGTCGAAAACCCAGTAAGGCAAAGTACTATCTAGATGATACAGCTGAAATAGTGAGATTGATGCAGGGTTTAGCCTCTGTTTCAGAACAGAAAGTTCCATGTTAA 2559 0.422 MVSRSYSNLLELASGEAPSFGIMNRRIPRIMTVAGLISDVDDDPAESVCSDPSSSSVHRDRIIIVANQLPIRAQRKQDGNRNWSFEWEENSLLQLKDGLGDDDIEVIYVGCLKEDVHPNDQDEVSQILLETYKCVPTFLPPDQFTRYYHGFCKQQLWPLFHYMLPLSPEHGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPIGIHMGQLQSVLRLPETEDKVCELIKQFSDQGRTMLLGVDDMDIFKGISLKLLAMEQLLIQNPEYQGKVVLVQIANPARGKGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNETLDNVLGLVSSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERSCSDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPPSKSIEILNTLCRDKNNMVFLVSARSRKDLSEWFSPCENLGVAAEHGYFIRMKRDAEWETCVPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSNVEVKPQGVSKGLVAKRLLSSMEEKGMSPDFVLCIGDDRSDEDMFEVITSSMAGPIAPRAEVFACTVCRKPSKAKYYLDDTAEIVRLMQGLASVSEQKVPC. 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06414 852 FunFam Alpha,alpha-trehalose-phosphate synthase 316 533 - -
Seca9g06414 852 CDD GT20_TPS 61 549 IPR001830 GO:0003824|GO:0005992
Seca9g06414 852 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 843 IPR001830 GO:0003824|GO:0005992
Seca9g06414 852 Pfam Glycosyltransferase family 20 61 549 IPR001830 GO:0003824|GO:0005992
Seca9g06414 852 Gene3D - 595 723 IPR023214 -
Seca9g06414 852 Gene3D - 724 851 IPR023214 -
Seca9g06414 852 CDD HAD_TPP 597 837 - -
Seca9g06414 852 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 551 - -
Seca9g06414 852 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 725 851 - -
Seca9g06414 852 Gene3D Glycogen Phosphorylase B; 315 533 - -
Seca9g06414 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 595 712 - -
Seca9g06414 852 Pfam Trehalose-phosphatase 599 832 IPR003337 GO:0003824|GO:0005992
Seca9g06414 852 NCBIfam trehalose-phosphatase 595 842 IPR003337 GO:0003824|GO:0005992
Seca9g06414 852 SUPERFAMILY HAD-like 596 842 IPR036412 -
Seca9g06414 852 Gene3D Glycogen Phosphorylase B; 53 314 - -
Seca9g06414 852 NCBIfam HAD-IIB family hydrolase 598 799 IPR006379 -
Seca9g06414 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06414 Seca-Chr9 181641498 181645487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06414 1 851 Trehalose Biosynthesis Gene Families AT1G68020 81.293 0.0 1465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06414 K16055 - gmx:100818822 1580.84