Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06412 ATGGGAATATCTAGAGATTCCATGCACAAAAGGCGTGCCACTGGTGGCAAGAAGAAGGCATGGAGAAAGAAGAGAAAGTATGAGCTTGGTCGCCAGCCAGCAAACACCAAGTTATCAAGCAACAAGACAGTTAGGAGGATTCGTGTTAGGGGTGGCAATGTGAAATGGAGGGCATTGAGATTGGATACTGGAAATTACTCATGGGGTAGTGAAGCTGTTACTCGCAAGACTCGTATTCTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAAACTCTGGTCAAGAGTGCTATTGTCCAGGTTGATGCCGCTCCATTCAAACAGTGGTACCTTCATCACTATGGTGTTGATATTGGTAGAAAAAAGAAAGCGGCATCCAAGAAGGACTCTACAGAGTTGAACTTACAGGAGGGTGGTGAAGCTGCTGCTGAAGAAACTAAGAAAAGTAATCATGTTCAGAGAAAACTTGAGAAGCGCCAGAAAGATCGTAAGCTTGATCCTCACATTGAAGAGCAGTTTGGTGGTGGTCGATTGCTGGCCTGTATTTCTTCTCGCCCTGGTCAATGTGGTCGGGCTGATGGGTACATTCTGGAAGGTAAGGAACTGGAATTTTACATGAAGAAATTACAGAAGAAGAAGGGAAAGGGTGCTGCTTAA 669 0.4484 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLHHYGVDIGRKKKAASKKDSTELNLQEGGEAAAEETKKSNHVQRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06412 222 MobiDBLite consensus disorder prediction 129 172 - -
Seca9g06412 222 CDD Ribosomal_S8e_like 5 201 - -
Seca9g06412 222 MobiDBLite consensus disorder prediction 11 26 - -
Seca9g06412 222 FunFam 40S ribosomal protein S8 166 219 - -
Seca9g06412 222 PANTHER 40S RIBOSOMAL PROTEIN S8 1 219 IPR001047 GO:0003735|GO:0005840|GO:0006412
Seca9g06412 222 MobiDBLite consensus disorder prediction 145 172 - -
Seca9g06412 222 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Seca9g06412 222 FunFam 40S ribosomal protein S8 109 180 - -
Seca9g06412 222 FunFam 40S ribosomal protein S8 32 165 - -
Seca9g06412 222 Gene3D - 26 111 - -
Seca9g06412 222 Pfam Ribosomal protein S8e 5 201 IPR022309 -
Seca9g06412 222 Gene3D Ribosomal protein S8e, subdomain 112 180 IPR042563 -
Seca9g06412 222 NCBIfam ribosomal protein eS8 1 203 IPR001047 GO:0003735|GO:0005840|GO:0006412
Seca9g06412 222 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06412 Seca-Chr9 181622002 181627035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06412 1 210 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.412 8.31e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06412 K02995 - gmx:100500112 381.719